LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g0382	ATGGGTTGTTTTCGTTGTGGAAAATCAGATAAAAAGTTGAAGAAAAACAGTAACAGTAGCAGCCACAACAGCAACAACAACAGCAAACCCAATGTTCAAACACAGTCCAGTCCAGATGCATTGAAAGTTAATCCATATTTGGATGTGAAGAAGGAGACGGATGTGGAGAAACAGGACTCTAAGGAAGTTAATCCATCTTTGGATGTGAAGAAGGAGGTCTCTGGGAATGGATTACCTGATAAAAATGGATCACCTGATAAAAATGGATTACCTGATAAAAATCAGGCACGGACATTTACATTTCATCAACTTGCGGTTGCAACTGATAATTTCAGGTCTGATTGTTTCTTGGGCGAGGGAGGTTTTGGCAAAGTTTTTAAGGGATATTTGGATAACCCAAGCCAGGTTGTGGCAATCAAGCAACTTGATCGCAATGGATTGCAAGGGATTAGGGAATTTTTTGTTGAAGTATTGACATTGAGCTCTGTTGATCACCCTAATCTTGTCAAATTAATTGGGTATTGTGCTGAGGGTGATCAAAGACTGCTAGTTTACGAGTACATGCCATTAGGATCTTTGGAAAACCATTTGCATGACCTTCCACCTGGCACGAAACCACTTGATTGGAATTCAAGAATGAAAATAGCTGCTGGTGCAGCCAAAGGCTTAGAGTATTTACATGACAAAATGTATCCCCCTGTTATATACCGTGATCTGAAGTGCTCAAACATTTTGCTTGGGGAGGGCTATCATCCTAAACTATCAGATTTTGGCTTGGCAAAAGTGGGTCCTACAGGGGATAAGACTCATGTTTCGACAAGGGTGATGGGTACATATGGGTACTGTGCACCAGATTATGCAATGACCGGTCAGCTGACATTTAAGTCAGATATTTACAGCTTCGGGGTGGTTCTTTTGGAGCTCATTACAGGCAGGAAAGCAATTGATAATTCAAAAGGTGCTAGGGAGCAAAATCTGGTTGCATGGGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCATTACTCCATGGTCAGTATCCTGTCAGAGGTTTGTACCAAGCTCTTGCCATTGCTGCAATGTGTGTGCAGGAGCAACCTAACATGCGGCCCCTCATAGCTGATGTCGTTACTGCTTTAAACTACCTTGCTTCTCAAACATACAACCCCCAAATCCATCCAGTCCAAAGCCACCAGGGGAGCATTTCTCCCACAACGAGAAAGGGCAGTGATAAGAAGTCATCGCAGGAAATGCACCAGAGGAAGACTGAAGGAGAGAAGTAA	1299	0.4326	MGCFRCGKSDKKLKKNSNSSSHNSNNNSKPNVQTQSSPDALKVNPYLDVKKETDVEKQDSKEVNPSLDVKKEVSGNGLPDKNGSPDKNGLPDKNQARTFTFHQLAVATDNFRSDCFLGEGGFGKVFKGYLDNPSQVVAIKQLDRNGLQGIREFFVEVLTLSSVDHPNLVKLIGYCAEGDQRLLVYEYMPLGSLENHLHDLPPGTKPLDWNSRMKIAAGAAKGLEYLHDKMYPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPTGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNSKGAREQNLVAWARPLFKDRRKFSQMADPLLHGQYPVRGLYQALAIAAMCVQEQPNMRPLIADVVTALNYLASQTYNPQIHPVQSHQGSISPTTRKGSDKKSSQEMHQRKTEGEK*	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g0382	432	Gene3D	Phosphorylase Kinase; domain 1	84	187	-	-
	Vvi6g0382	432	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	398	432	-	-
	Vvi6g0382	432	FunFam	probable serine/threonine-protein kinase RLCKVII	84	187	-	-
	Vvi6g0382	432	CDD	STKc_IRAK	117	386	-	-
	Vvi6g0382	432	Gene3D	Transferase(Phosphotransferase) domain 1	188	406	-	-
	Vvi6g0382	432	ProSitePatterns	Protein kinases ATP-binding region signature.	117	140	IPR017441	GO:0005524
	Vvi6g0382	432	FunFam	Serine/threonine-protein kinase PBS1	188	403	-	-
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	45	68	-	-
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	1	94	-	-
	Vvi6g0382	432	PANTHER	OS07G0668900 PROTEIN	3	397	-	-
	Vvi6g0382	432	SUPERFAMILY	Protein kinase-like (PK-like)	96	406	IPR011009	-
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	415	432	-	-
	Vvi6g0382	432	ProSiteProfiles	Protein kinase domain profile.	111	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0382	432	Pfam	Protein kinase domain	116	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0382	432	SMART	serkin_6	111	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	18	41	-	-
	Vvi6g0382	432	MobiDBLite	consensus disorder prediction	398	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g0382	Vvi-Chr6	4635540	4641024	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g0382	80	390	Glycoside Hydrolase	AT3G07070	63.023	5.60e-145	417

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Vvi6g0382		Pkinase	2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g0382	-		-	vvi:100262185	854.744