Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0381 ATGGGGTTTGTTCAAGCAAACAATGATGGTGGTGGGGAGGGAGGGTTGGTGAATAGAGAGAACAGTACATGGGATGAGGGAAAAGAAGTTAGGAATGGAATGGTGGGTGAGGGGCAAGGCTTGGGCTCATCTGAGGAAGATGAGCCTGGGAGCAATGAGATAATTGAAGATGCAAATAAGGGGTCGGAAGAAGCAATCCAAGTCCATGATGGGCTGCAGAATTCGCAGCAACAGCCTCAAGGGTCAGCAATAAATTGGGATAGTTTTCTCCCCATTAGATCACTGAAGGTTCTTCTGGTGGAAAATGATGATTCGACACGCCATGTAGTTACTGCTCTGCTTCGGAATTGCAGTTATGAAGTTACTGCTGTTGCAAACGGTCTTCAGGCATGGAAAATCTTGGAAGATTTGACCAATCATATTGATATCGTCCTAACAGAGGTAGTCATGCCCTTTATATCGGGAATTGGTCTTTTATGCAAGATCATGAGCCACAAAACTTTCAAGAATATTCCTGTGATTATGATGTCATCCCATGATTCTATGGGTATAGTCTTTAAGTGTCTGTCCAAGGGTGCAGTTGATTTTTTGGTGAAACCTATTCGAAAGAATGAACTTAAAAACCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGCGAAAGTGGCACACAGACTAAAAAATCTGTGAAGTCAAAAAGCAATGATGAGTCTGAAAACAATACGGGCAGCAGTGATGAGCGTGATAATGGAAGTACTGGCCCAAGCATTCGGGATGGAAGTGACAATGGAAGTGGTACCCAGAGCTCATGGACAAAAAGAGCAGCTGAAGTTGACAGCCCCCAACCATTATCACCATTGGATCAATTGGCTGATGCACCTGATAGCACTTGTCCCCAGGTAATCCATACAAAGCCTGGAACTTTAAGCAACCAGTGGGTGCATGTTATTGAAACAAAAGAATGCCAGGGCAAGGATGAACAACCTGACAATGTTGCAATGGGTAGAGACTTGGAATTAGGAGTAGCTACAAATCCAGCTGTACAACTTGAATATCAACATGAGAAGTTTTCAACCTACCCAACATGCAAGAGGCAGAATAAATTGCCTGAATCAGATAGTAAACCATTTGATAAAGAACACTTGGAACATAACAGTACAAGTGCCAATTGTACTGACCCACAGGTAGAAAGCAGAACTTTTGAGAATCCAAATGGCCTTTCTGATGTGTCACAGATCAAAGACAAGGGAAGCTGTGAAACTACAGAACTGCCACCCCTTGACTTAAGTTTAAAAAGGCTGAGAGGAGCAGGAGATGTTGGGGCCTGTGTGCATGATGATCGCAGTATTTTAAGACATTCAGATCTTTCAGCATTCTCAAAATACAATACTGCTTCTTCTGCTAATCAGGCTCCCACAGGGAATGTAGGAAGCTGTTCTCCACTCGATAATAGCTCAGTTGCAATGAAGACAGAAACAATGCATAATTTCCCCTCTCATGTGGATGGCATTCCTCCAAATCAGCAGTCTAATGGCAGTAGCAACAACATTGACATGGTCTCTACCACCAAATATGCTATTCCCAAGTCAGAAGCTTACAACGAGAAATCAGAGTCAACGTCAGCATTTAAATGTTTCCATTCATCTGCCTTCCAACCTGTAACTAGTGGGCGAATGTTTCCACCACAGAAAGTCTCATCTGGGAAGGCAGATGATGTGGTAGTTGACGCAGTTCAAGCACAAGTAATAGGCTCACACCAGCAGGTCCAAGTCCAGCATCACCATCACCACTATCACCATTATCATCACCATGTCCACAGCATGCAGGAGCAGCAGCAGACTGATAATGACGATCTCTTTTTGAAGAACATGGCAGCAGCAGCTCCACAATGTGGATCATCAAATGTGATTGGTGGACCCACTGAAGGCAATGCTGGAAACTACAGTGTAAATGGGAGTGCTTCGGGAAGTAACCATGGGAGCAATGGGCAGAATGGGAGCAGCACTGCCTTGAACGTGGGTGCAACAAACATGGAAGGTGACATTGGGGCAGCTGGAAACAGTGGAGCTGGTGCCATCAGCGGAAAGGGCGGTGGAAATAGAGTTGAAGAAGACCGGTTTGCGCAGAGAGAGGCTGCCTTGACTAAATTCCGTCAGAAAAGGAAAGAGAGATGCTTTGAAAAGAAGGTAACAAGCTTTAGCTATGCATGTTTTTTCTAG 2235 0.4452 MGFVQANNDGGGEGGLVNRENSTWDEGKEVRNGMVGEGQGLGSSEEDEPGSNEIIEDANKGSEEAIQVHDGLQNSQQQPQGSAINWDSFLPIRSLKVLLVENDDSTRHVVTALLRNCSYEVTAVANGLQAWKILEDLTNHIDIVLTEVVMPFISGIGLLCKIMSHKTFKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTKKSVKSKSNDESENNTGSSDERDNGSTGPSIRDGSDNGSGTQSSWTKRAAEVDSPQPLSPLDQLADAPDSTCPQVIHTKPGTLSNQWVHVIETKECQGKDEQPDNVAMGRDLELGVATNPAVQLEYQHEKFSTYPTCKRQNKLPESDSKPFDKEHLEHNSTSANCTDPQVESRTFENPNGLSDVSQIKDKGSCETTELPPLDLSLKRLRGAGDVGACVHDDRSILRHSDLSAFSKYNTASSANQAPTGNVGSCSPLDNSSVAMKTETMHNFPSHVDGIPPNQQSNGSSNNIDMVSTTKYAIPKSEAYNEKSESTSAFKCFHSSAFQPVTSGRMFPPQKVSSGKADDVVVDAVQAQVIGSHQQVQVQHHHHHYHHYHHHVHSMQEQQQTDNDDLFLKNMAAAAPQCGSSNVIGGPTEGNAGNYSVNGSASGSNHGSNGQNGSSTALNVGATNMEGDIGAAGNSGAGAISGKGGGNRVEEDRFAQREAALTKFRQKRKERCFEKKVTSFSYACFF* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0381 744 MobiDBLite consensus disorder prediction 250 281 - -
Vvi6g0381 744 PANTHER TWO-COMPONENT RESPONSE REGULATOR 95 282 IPR045279 GO:0009736
Vvi6g0381 744 MobiDBLite consensus disorder prediction 1 54 - -
Vvi6g0381 744 ProSiteProfiles Response regulatory domain profile. 96 214 IPR001789 GO:0000160
Vvi6g0381 744 MobiDBLite consensus disorder prediction 392 423 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 219 234 - -
Vvi6g0381 744 Pfam Response regulator receiver domain 97 208 IPR001789 GO:0000160
Vvi6g0381 744 MobiDBLite consensus disorder prediction 507 523 - -
Vvi6g0381 744 CDD psREC_PRR 97 200 - -
Vvi6g0381 744 SMART REC_2 95 210 IPR001789 GO:0000160
Vvi6g0381 744 Gene3D - 94 253 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 502 523 - -
Vvi6g0381 744 FunFam Two-component response regulator-like PRR37 95 253 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 219 304 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 653 679 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 235 249 - -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 373 391 - -
Vvi6g0381 744 SUPERFAMILY CheY-like 93 219 IPR011006 -
Vvi6g0381 744 MobiDBLite consensus disorder prediction 369 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0381 Vvi-Chr6 4607415 4629244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0381 37 484 Response Regulator Gene Family AT5G60100 49.339 2.21e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi6g0381 Response_reg 1.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0381 K12129 - vvi:100246836 1380.54