Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0378 ATGGAGAACGAGTCCGCGGCTGTGGAAGTGAAGGGGGTTCCATCCTACGGTGGGAAATACGTCCAGTACAACGTGCTCGGTAACCTCTTCGAGGTCTCGGCTAAGTACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGCTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGGGAATGCATTTGACAACAGGATTGATGCTAAAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATGATGTGTATATTGTTTATGAATTAATGGATACTGATCTACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAGTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATGTTTTGCATCGAGATTTGAAACCAAGCAACCTACTACTGAATGCTGACTGTGACCTCAAGATTTGTGACTTTGGACTTGCAAGAACCACCTCAGAGACAGATTTCATGACAGAATATGTTGTTACCCGGTGGTATCGAGCCCCTGAATTGCTACTCAACTGTTCAGAATATACTGCAGCCATTGATATCTGGTCAGTTGGTTGCATTTTGATGGAGATCCTTAGAAGAGAGCCACTTTTTCCTGGTAAAGACTATGTTCAGCAGCTGGTGCTTATAACTGAGCTATTAGGTTCCCCGGAAGATTCAGATCTTGGATTTCTTAGAAGTGATAATGCTAGGAAGTATGTCAAGCAGCTCCCTTGTGTTCCAAAGCAACCTTTCTCAGAGAAGTTTCCTAACATATCTCCAATAGCCATGGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGAGGAGCCCATCTGCCCCTCTCCTTTCATCTTCGATTTTGAACAATCATCCTTAAGTGAAGACGATATAAAGGAACTCATATGGAATGAGTCTCTGAATTTCAACCCTGATGAGATGCTGGAGTGA 1116 0.4355 MENESAAVEVKGVPSYGGKYVQYNVLGNLFEVSAKYVPPIQPVGRGAYGIVCCATNSETNKEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHENIVKIKDIIRPPDKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNADCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLVLITELLGSPEDSDLGFLRSDNARKYVKQLPCVPKQPFSEKFPNISPIAMDLVEKMLVFDPSKRITVEEALNHPFLLPLHEINEEPICPSPFIFDFEQSSLSEDDIKELIWNESLNFNPDEMLE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0378 371 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Vvi6g0378 371 CDD STKc_TEY_MAPK 30 366 - -
Vvi6g0378 371 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0378 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 323 - -
Vvi6g0378 371 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Vvi6g0378 371 FunFam Mitogen-activated protein kinase 121 350 - -
Vvi6g0378 371 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0378 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vvi6g0378 371 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0378 371 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi6g0378 371 FunFam Mitogen-activated protein kinase 22 131 - -
Vvi6g0378 371 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Vvi6g0378 371 SUPERFAMILY Protein kinase-like (PK-like) 40 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0378 Vvi-Chr6 4580820 4584607 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0378 9 364 MAP Kinase Gene Family AT1G07880 81.180 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi6g0378 Pkinase 6.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0378 K04371 - vvi:100251947 757.673