Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0374 ATGTTGGATCTCAATCTCAATGTTGGCTCGAGCGATTCGACTCAGCACGGAGACTCGGTGGTAGGGTCGGAGAAGTTTCCGGAAGGTTCTGGAACTCAAATGGACGAGTCGGGGACCTCCAACTCGTCAATCGTGAATGCAGAAGCGTCGAGCAATGGCGGCGGCGACGATGACTCTTGCTCCACACGCGCCGGCGATGCCTTCTCGTTGAATTTCGATATCTTGAAGGTCGGTGATTGCGGTAGTCCGAACGATGTCGTTACGAGGCAGCTGTTCCCGATGAGTGCCGGTGGAGGAGTTGGTGGAGATTCTGTGTTTTTTCAGGGGCAGTCGTCAAGCAATTGGATCGACCTGTCATTCAATCAGAGTGGTACTGTTGGTGGGCAAGAGGTGAGAGTGGCTCAACAGCATCCACAGCCACAGCAACAGCAACAGCCGGTGAAGAAGAGCAGGAGGGGACCCAGGTCCCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCCTATGATCGAGCGGCTATTAAGTTTCGGGGAGTTGATGCTGACATTAATTTTAATCTTAGTGATTATGATGAGGATCTGAAACAGATGAAGAATCTGACAAAGGAAGAATTTGTGCACATACTCCGTCGCCAGAGTACTGGTTTCTCCAGGGGGAGCTCAAAATACCGAGGGGTGACACTGCACAAATGTGGCCGGTGGGAAGCTCGAATGGGTCAATTTCTTGGAAAAAAGTATATATATCTTGGGCTCTTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCGGCTATCAAATGTAATGGAAGAGAGGCAGTCACCAACTTTGAGCCTAGTACTTATGAAGGGGAGATGATCCCTGAGGCCAGCAATGAAGGTAGTGATCACAATCTTGATCTGAACTTGGGGATTTCTCCTCCTTTAAGCAATGGCCCAAAGGAAATTGACGGCTTGGGGCATCTCCAATTTCACTCTGGCTCTCATGATGCTCACAATGGAAGGAGATCAATGATGGAGAACCCTAATATAGAAACAGCGGGTGACCCGTCTTTCAAAGGGCTAGCAATGACATCGGAGCACCCTCCTCTGTGGACTGGTGTATATCCCAGCTTCTTTCCTGGCTATGAGGAAAGGGCAACAGAGAGAAGAATTGAAGCAAGTTCTTCACAAGGACTCCCAAACTGGGGGTGGCAAATGCATGGTCAGGTCACTGCTACTCCAATGCCATTGTTCTCTACTGCAGCATCATCAGGATTCTCATCTTCGGCTACCACTGCTCCCTCCGCTGCCATTCTTTCATCTAAACCGCCCAACACAACATCCCACTCTATCTGTTTTGCTTCATCCGCCTCAGCCGTCACCCACCCCTCTCAATACTATTTCCAGATGAAGCCCCCACCACCTTAA 1503 0.4977 MLDLNLNVGSSDSTQHGDSVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGGGDDDSCSTRAGDAFSLNFDILKVGDCGSPNDVVTRQLFPMSAGGGVGGDSVFFQGQSSSNWIDLSFNQSGTVGGQEVRVAQQHPQPQQQQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHNLDLNLGISPPLSNGPKEIDGLGHLQFHSGSHDAHNGRRSMMENPNIETAGDPSFKGLAMTSEHPPLWTGVYPSFFPGYEERATERRIEASSSQGLPNWGWQMHGQVTATPMPLFSTAASSGFSSSATTAPSAAILSSKPPNTTSHSICFASSASAVTHPSQYYFQMKPPPP* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0374 500 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Vvi6g0374 500 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Vvi6g0374 500 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700|GO:0006355
Vvi6g0374 500 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677
Vvi6g0374 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 348 - -
Vvi6g0374 500 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g0374 500 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Vvi6g0374 500 MobiDBLite consensus disorder prediction 1 59 - -
Vvi6g0374 500 CDD AP2 160 218 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 MobiDBLite consensus disorder prediction 357 386 - -
Vvi6g0374 500 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 Pfam AP2 domain 251 301 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
Vvi6g0374 500 MobiDBLite consensus disorder prediction 30 58 - -
Vvi6g0374 500 MobiDBLite consensus disorder prediction 135 149 - -
Vvi6g0374 500 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 MobiDBLite consensus disorder prediction 135 161 - -
Vvi6g0374 500 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Vvi6g0374 500 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0374 Vvi-Chr6 4494597 4498088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0374 1 498 AP2-EREBP Transcription Factor Family AT5G60120 46.109 1.21e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi6g0374 AP2 3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0374 K09284 - vvi:100246815 957.592