Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0370 ATGGCTGACAATACGAGGAACTCCACCGGCGGTCAATTAAGTGATTTTCCGGCTGTTCCGACACATGGAGGTCTGTTTTTCCAACACAACATCTTCGGAAATCTCTTTGAGATCACAGCGAAGTACCGGCCTCCGATCATGCCGATCGGTCGTGGCGCATACGGGATCGTCTGCTCGGTGTTGAATTCGGAGACGAATGAAATGGTAGCAATCAAGAAAATAGCGAACGCCTTCGATAATCACATGGATGCGAAGCGTACGCTTCGGGAGATTAAACTTCTTAGACATTTGGATCACGAAAACGTTATAGGTATAAGAGATGTAGTCCCTCCTCCTTTAAGGAGAGAATTTTCTGATGTCTACATTGCCACGGAACTCATGGACACTGATCTGCACCAAATAATTCGCTCCAACCAAGGTTTATCAGAGGAGCACTGTCAATACTTCTTGTACCAGATACTTCGTGGACTGAAATATATACACTCCGCAAATGTGATTCATAGAGATTTGAAGCCCAGCAACCTCTTGCTGAATGCAAATTGTGATCTAAAAATTTGTGATTTTGGTCTTGCTCGTCCAACTGCAGAGAATGAGTTCATGACGGAATATGTTGTTACGAGATGGTACAGGGCACCTGAACTACTGCTGAATTCTTCAGATTACACTGCTGCAATTGATGTCTGGTCTGTGGGTTGCATTTTTATGGAGCTTATGAACAGAAGGCCTTTATTTGCGGGTAAAGACCATGTGCATCAAATGCGCTTATTGACAGAGCTTCTTGGCACACCCACTGAGTCTGATCTTGGGTTTGTTCGGAATGATGATGCAAGAAGATATATCATGCAACTCCCCCAACATCCCCGCCAGCCATTAGTAAACGTTTTCCCACATATTCATCCACTGGCCATTGATCTCATTGATAGAATGTTGACATTTGATCCGACTAAAAGAATTACTGTTGAAGAAGCATTAGCCCATCCTTACCTTTCAAGATTACATGATACAGCTGATGAACCAGTTTGCCCAGAGCCATTTTCCTTTGAATTTGAGCAACAAGCTCTGGTAGAAGAACAGATGAAGGATATGATTTACCAGGAGGCTTTATTTTTCAATCCAGGTTACGCTTAA 1128 0.4326 MADNTRNSTGGQLSDFPAVPTHGGLFFQHNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNSETNEMVAIKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVVPPPLRREFSDVYIATELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTAENEFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRRPLFAGKDHVHQMRLLTELLGTPTESDLGFVRNDDARRYIMQLPQHPRQPLVNVFPHIHPLAIDLIDRMLTFDPTKRITVEEALAHPYLSRLHDTADEPVCPEPFSFEFEQQALVEEQMKDMIYQEALFFNPGYA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0370 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 41 334 - -
Vvi6g0370 375 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Vvi6g0370 375 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
Vvi6g0370 375 Pfam Protein kinase domain 48 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0370 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vvi6g0370 375 FunFam Mitogen-activated protein kinase 127 356 - -
Vvi6g0370 375 SMART serkin_6 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0370 375 FunFam Mitogen-activated protein kinase 28 137 - -
Vvi6g0370 375 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi6g0370 375 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Vvi6g0370 375 CDD STKc_TEY_MAPK 36 372 - -
Vvi6g0370 375 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0370 375 SUPERFAMILY Protein kinase-like (PK-like) 48 337 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0370 Vvi-Chr6 4433253 4436268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0370 7 375 MAP Kinase Gene Family AT3G45640 82.656 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi6g0370 Pkinase 6.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0370 K20536 - vvi:100263976 770.385