Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0365 ATGGCTGAAGCTCCGACGAGCCCCGGCGGTGGCGGCAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCCAATGTGCGAGAGCAGGATAGGTACCTTCCTATCGCAAATATCAGCAGGATCATGAAGAAGGCTCTTCCGGCCAACGGCAAGATCGCCAAGGATGCGAAGGAGACTCTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATCACCAGCGAAGCGAGTGACAAGTGCCAGAAGGAGAAGAGGAAGACAATTAATGGTGATGATTTATTATGGGCAATGGCTACGTTAGGGTTTGAAGATTATATTGATCCTCTGAAAGTGTATCTACACAGGTTCAGAGAGGGTGACGCCAAGGGATCTGTGAAGGGTGGAGATGGATCTACTAAAAAAGATTGA 402 0.5025 MAEAPTSPGGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLHRFREGDAKGSVKGGDGSTKKD* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0365 133 Gene3D Histone, subunit A 17 133 IPR009072 GO:0046982
Vvi6g0365 133 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi6g0365 133 SUPERFAMILY Histone-fold 28 121 IPR009072 GO:0046982
Vvi6g0365 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi6g0365 133 MobiDBLite consensus disorder prediction 1 29 - -
Vvi6g0365 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vvi6g0365 133 FunFam Nuclear transcription factor Y subunit B-3 20 133 - -
Vvi6g0365 133 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi6g0365 133 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vvi6g0365 133 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0365 Vvi-Chr6 4347861 4348962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0365 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.710 5.96e-74 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi6g0365 CBFD_NFYB_HMF 3.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0365 K08065 - vvi:100258807 256.144