Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0357 ATGGGGAAGACACGTGGAATGGGAGCTGGTCGCAAGCTGAAGTCCCACCGTATAAGGCAAAGGTGGGCTGACAAGGCATATAAGAAGTCCAACCTTGGCAATGAATGGAAGAAACCATTTGCTGGGTCCTCCCATGCAAAGGGCATTGTTCTTGAGAAAATTGGTATAGAGGCAAAACAGCCAAACTCTGCTATTAGAAAATGTGCTCGTGTTCAGCTGATTAAGAATGGGAAGAAGATTGCTGCCTTTGTACCAAATGATGGTTGCTTAAATTATATTGAAGAAAATGATGAGGTGCTGATAGCAGGATTTGGTCGTAAGGGGCATGCTGTTGGAGATATTCCCGGTGTCAGATTCAAGGTTGTGAAGGTATCCGGTGTGTCTCTTTTGGCTCTCTTCAAAGAGAAGAAGGAGAAGCCAAGGTCCTAA 429 0.4499 MGKTRGMGAGRKLKSHRIRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0357 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vvi6g0357 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Vvi6g0357 142 Gene3D - 25 142 IPR012340 -
Vvi6g0357 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vvi6g0357 142 NCBIfam 30S ribosomal protein S12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Vvi6g0357 142 FunFam 40S ribosomal protein S23 25 142 - -
Vvi6g0357 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Vvi6g0357 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vvi6g0357 142 Pfam Ribosomal protein S12/S23 32 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0357 Vvi-Chr6 4260133 4262263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0357 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 96.479 5.56e-97 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0357 K02973 - vvi:100265528 287.73