Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0351 ATGGCGTGCAGTGACCCTACATCCGCCCCCAACCCCACCACCACCTCTCCGTCGTCTCCTCACTCACTCTCTCCACCCTCATCCTCTACTCCTCCCCCTCCCACCGTCGTCCTCAGCCCTTGTGCCGCCTGCAAGATTCTCAGGCGGCGCTGCGCCGAAAAATGTGTGTTAGCTCCCTACTTTCCTCCCACCGACCCCGCCAAATTCACCACCGCTCATCGCGTCTTCGGCGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTATCAGCGCGCCGATGCTGTGAGTAGCATGGTTTATGAAGCTCAAGCCAGGATTAGAGACCCAGTCTATGGGTGTACGGGAGCGATCTGTCAGCTGCAAAAACAAGTCAGCGAGCTTCAAGCGCAATTAGCAAAGGCGCAAGCCGAGCTCGTAAACATGCAATGCCAGCAAGCAAACCTTATAGCTATAATTTGTATGGAAATGTCAGGATCTCCTCAACCCTCTTCCTTCCAACAGTCACTTGACAGCTTTATCAGCCCTCCAAGCTATCAAAGCGGCTCCTGCTTCCTTGATGACAACATCACCGGAGCTGCATGGGAGCCTCTCTGGACTTCATCTTTATAA 615 0.5382 MACSDPTSAPNPTTTSPSSPHSLSPPSSSTPPPPTVVLSPCAACKILRRRCAEKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEAQARIRDPVYGCTGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIAIICMEMSGSPQPSSFQQSLDSFISPPSYQSGSCFLDDNITGAAWEPLWTSSL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0351 204 MobiDBLite consensus disorder prediction 1 34 - -
Vvi6g0351 204 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g0351 204 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
Vvi6g0351 204 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Vvi6g0351 204 Coils Coil 119 146 - -
Vvi6g0351 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0351 Vvi-Chr6 4201646 4202347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0351 36 201 AS2 family AT2G28500 65.385 1.38e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi6g0351 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0351 - - vvi:104879565 340.887