Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0349 ATGGAGTGCAGTGACAGCACGGCCGCCACCAACAACAGCTCTTGCTCATCATCGTCTCCTCGCTCACTCTCGCCATCTTCATCCTCTTCTCCTCCCCCTCCCAACGTCGTCCTTAGCCCTTGTGCCGCTTGCAAGATTCTCCGGCGTCGCTGCGCCGATAAATGTGTGTTAGCGCCCTACTTTCCGCCCACCGACCCCGCCAAATTCACCACCGCTCATCGTGTGTTCGGGGCCAGCAATATCATCAAGTTCTTACAGGAACTTCCCGAATTTCAAAGAGCCGATGCAGTTAGCAGCATGGTTTATGAAGCGCAAGCGAGGATTAGAGACCCGGTTTACGGATGCGCGGGAGCGATTTGTCAGCTTCAAAAACAACTTGACGAGCTCCAAGCACAATTAGCAAAGACGCAAGCCGAGCTAGTGAACATGCAATGCCAACAAGCGAACCTTGTAACTATGATATGCATGGAAATGGAAATGTCTCAGTCCCCTCAACCTTCCTCCGAAGAATCCCTTGATAGCTTAATTAGCCCACAAAGCTATCAGAGTAACTCCTTCTTCCTCGATGACAGCAATATTGGAGCCACATGGGAGCCTCTCTGGACATGA 609 0.5156 MECSDSTAATNNSSCSSSSPRSLSPSSSSSPPPPNVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEAQARIRDPVYGCAGAICQLQKQLDELQAQLAKTQAELVNMQCQQANLVTMICMEMEMSQSPQPSSEESLDSLISPQSYQSNSFFLDDSNIGATWEPLWT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0349 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 169 - -
Vvi6g0349 202 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
Vvi6g0349 202 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Vvi6g0349 202 MobiDBLite consensus disorder prediction 1 25 - -
Vvi6g0349 202 MobiDBLite consensus disorder prediction 1 35 - -
Vvi6g0349 202 Coils Coil 119 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0349 Vvi-Chr6 4181109 4182076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0349 36 202 AS2 family AT2G28500 65.385 3.99e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi6g0349 LOB 2.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0349 - - vvi:100251969 353.984