Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0348 ATGGCGACAGCGGACTCCGACTCGGGAGACTTCCAGTCCGTCGTCTCCCATCAACGGCGGGAACTCCTGGAAGCGCAAACCCTGGAGTCAGACCTCGACTTGGCATTCCGCCTCCAACTCGAAGAAGCTCTCGCGGCTTCTATGTCTTCTCTCCCATCTACATCGTCGTCTCCGCCACGAGTGCAAAACCCCGACACTGACTGCTTCGTTTCGGGCCTCAGGGCTTTGCAGACGGATGAACTTGACCGGCTCGAACAGGAGGTCAGGGACCGCCAGCAGAGCGAGGCAGAGATGACGAAGCTGCGTGAGGATATCCATCGGCGAGCGCATGATCAGAAGCTTGCGCGGGAAATCTCTCAGATGCCGGAAGAGGAATGGGAGGAGTACGGCGACAACTACGAGCGTCCGTTCGGGGAGGGGTCGTCTTCTGGGGAGGTGTTTAGGGTGTTTTTCAAGGGGTTGGCTCGTGAGGAGAAGATTGGGAATTCGAGGGAGCCGATTATGGGGATCGGCGTTTCGATTTGTGATTTTAGGGACAATTTGGTTTTCGAATTGCAGAAGCCATTGGTGGGGTGCGGGAAGAGCCATGAATACGCTGAGACTAGGGCAATGATCGAAGCGCTCAATGCAGCGCTTGCTTTGGATTTGACGCGTGTCGACCTTTTCTGCGATCATCAGCCGCTTTACCAGCGTGTTAGGGGCAAATGGCCACCTAAGAACCGTAAGATTGCTGCATTACTTGATCAGGTGGCTGTTCTTCGAAAAAAATTCACATACTGTAACCTGTTTCTTGTGATAAGACATGATATTAAGTTTGCGATTAAACTTGCAAATGATGCTATAAATTCTCAGATCATGAGACCTGCAAAATTTCTCCATGGCAATAATTTGAAGGAGACTTGCATAATTTGTTTAGAAGATACTGATATTGGTCAGATGTTTTCAGTTGATAGTTGCCTGCACCGCTATTGCTTTTCTTGTATGAAACAGCATGTGGAAGTGAAGTTGCTTCATGGAATGGTTCCTAAATGCCCTCATGAAGGCTGTAAATCACTGCTGAAAATTGACAGCTGTGGGAAATTCTTGACACCTAAATTGATTGGAATTATGAGTCAACGTCTGAAGGAAGACTCGATTCCTGTGACAGAGAAAGTTTATTGTCCATATCCTAGATGCTCTGCATTAATGTCTAAAAAGGAGGCTTTGGAATATGCCAACACTACTTCTGTTGGTGCTATACGAGCTGGAGCTAGAAAATGCATGACATGTAATGGCCTTTTCTGTATCAATTGCATGGTCCCTTGGCATAGTAAGATGACCTGCTTTGAGTACAAAAGATCAAATCCTTTTCCCCAGGCAGAAGATGCAAAACTGAAGTCGCTTGCAACAAGAAATCTGTGGCGTCAATGTGTGAAGTGCAACCATTTGATTGAACTTGCTGAGGGTTGCTTCCACATCACTTGCAGATGCGGTTATGAGTTCTGCTATACCTGCGGTGCTGAATGGAAGAACAAAAAGGCAACATGTTCCTGCCCACTCTGGGATGAGGATAATATTTGGGACGAAGGCAATAGAGATTTTGATGACGAATACTATTCAGAAGATGAATATAACTCTGAGGATGATGAATTTAATGATGATCTTTTTGGCTTTAATCAAGACTCTTATCGTTAG 1674 0.4654 MATADSDSGDFQSVVSHQRRELLEAQTLESDLDLAFRLQLEEALAASMSSLPSTSSSPPRVQNPDTDCFVSGLRALQTDELDRLEQEVRDRQQSEAEMTKLREDIHRRAHDQKLAREISQMPEEEWEEYGDNYERPFGEGSSSGEVFRVFFKGLAREEKIGNSREPIMGIGVSICDFRDNLVFELQKPLVGCGKSHEYAETRAMIEALNAALALDLTRVDLFCDHQPLYQRVRGKWPPKNRKIAALLDQVAVLRKKFTYCNLFLVIRHDIKFAIKLANDAINSQIMRPAKFLHGNNLKETCIICLEDTDIGQMFSVDSCLHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKSLLKIDSCGKFLTPKLIGIMSQRLKEDSIPVTEKVYCPYPRCSALMSKKEALEYANTTSVGAIRAGARKCMTCNGLFCINCMVPWHSKMTCFEYKRSNPFPQAEDAKLKSLATRNLWRQCVKCNHLIELAEGCFHITCRCGYEFCYTCGAEWKNKKATCSCPLWDEDNIWDEGNRDFDDEYYSEDEYNSEDDEFNDDLFGFNQDSYR* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0348 557 Pfam IBR domain, a half RING-finger domain 383 441 IPR002867 GO:0008270
Vvi6g0348 557 Pfam IBR domain, a half RING-finger domain 456 509 IPR002867 GO:0008270
Vvi6g0348 557 FunFam RBR-type E3 ubiquitin transferase 296 381 - -
Vvi6g0348 557 FunFam RBR-type E3 ubiquitin transferase 439 554 - -
Vvi6g0348 557 CDD BRcat_RBR_unk 381 444 - -
Vvi6g0348 557 ProSiteProfiles Zinc finger RING-type profile. 301 345 IPR001841 -
Vvi6g0348 557 MobiDBLite consensus disorder prediction 536 557 - -
Vvi6g0348 557 Gene3D - 147 287 IPR036397 GO:0003676
Vvi6g0348 557 ProSiteProfiles TRIAD supradomain profile. 297 521 IPR044066 -
Vvi6g0348 557 SUPERFAMILY RING/U-box 456 519 - -
Vvi6g0348 557 SUPERFAMILY Ribonuclease H-like 185 269 IPR012337 -
Vvi6g0348 557 FunFam RBR-type E3 ubiquitin transferase 147 284 - -
Vvi6g0348 557 SUPERFAMILY RING/U-box 299 380 - -
Vvi6g0348 557 CDD Rcat_RBR_unk 467 502 - -
Vvi6g0348 557 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Vvi6g0348 557 Pfam Reverse transcriptase-like 166 280 IPR002156 GO:0003676|GO:0004523
Vvi6g0348 557 Gene3D - 439 549 - -
Vvi6g0348 557 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 119 525 IPR031127 GO:0004842|GO:0016567
Vvi6g0348 557 SMART ibrneu5 454 511 IPR002867 GO:0008270
Vvi6g0348 557 SMART ibrneu5 372 441 IPR002867 GO:0008270
Vvi6g0348 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 379 IPR013083 -
Vvi6g0348 557 Coils Coil 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0348 Vvi-Chr6 4149846 4159575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0348 109 500 C3H Transcription Factor Family AT2G19610 35.516 3.35e-71 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0348 - - vvi:100241711 1108.2