Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0328 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTGGAGAAGCATGCTTTCTGTAATGGGGATTGTGATAAGGCCAGTTGTGTTTGTTGCTTGTCTTCTTCATCTTCTTCTTCTTCTGCGTCTAACTCCTCTGCTTCTCCTGACTCTTCTTCAATCTATTTGGAGCTTTGGCATGTTTGTGCTGGCCGTCTCACCTCCCTCCCCAAGAAAGGGAATGTGGTTGTTTATTTCCCACAAGGTCACTTGGAACAAGCTGCCTCGTCCTCTCCTTTTCCACCCATGGACATTTCTACCTTTGATCTCCCACCCCAGATCTTCTGCAGGGTTGTGAATGTTCAACTTCTCGCTAATAAGGAGAATGATGAGGTCTATACACAGGTCACTTTGCTTCCTCAACCAGAGTTGGCAGGCATAAATTTAGAGGGCAAAGAGCTTGAAGGACTAGGGGTAGATGAGGAGGGGGGTGGAGGATCACCAACAAAATCAACCCCCCACATGTTTTGCAAAACTCTTACAGCTTCGGACACTAGCACCCATGGTGGATTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCACCATTGGACTACAAACAGCAAAGACCCTCTCAAGAGCTTGTGGCTAAGGACCTACATGGAGTTGAGTGGAGATTCCGGCATATTTATAGAGGTCAGCCAAGGCGACATCTGCTTACTACAGGTTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCAGGGGATGCAGTGCTCTTTTTGAGAGGTGAAGGTGGAGAGCTGCGATTGGGAATTAGGAGGGCTGTTCGACCAAGAAATGGTCTTCCTGATTCAATCATTGGTAACCAGAATTCATATCCCAACGTTCTTTCCCTGGCAGCTAATGCAGTAGCCACCAAGAGCATGTTCCACGTTTTTTACAGCCCAAGGGCAAGTCATGCAGAGTTCGTCATTCCCTACCAAAAGTATGTGAAAAGCATCACAAATCCAATATCTATCGGGACAAGATTCAAAATGAGATACGACATGGATGATTCACCAGAAAGAAGGTCTAGTGGTGTAGTAACTGGAATTGGTGACTTGGATCCATATAGATGGCCCAACTCAAAATGGAGATGCTTGATGGTCAGATGGGATGATGATATTGTTAGTGATCCTCAAGAACGAGTTTCTCCATGGGAAATTGATCCTTCTGTTTCTCTCCCACCCTTGAGCATCCAGTCTTCCCCAAGGCTGAAGAAACTGCGGACCAGTCTGCAGGCAACCCCACCCAACAACCCTATCAATGGAGGGGGTGGGTTTTTGGACTTTGAGGAGTCTGTAAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTTTTGTATCACCCCTCTATGGATGTGATAAGGTAAACCGTTCGCTGGATTTTGAGATGCAAAATCCAAGCCTCGCTTCAACTGGAATAGAAAAGGCTAATTTTTGCGAGTTTATGAGGGCTCCGCCCACCACTTACACAGGCTTTTTGGAATCTGATAGATTCCCAAAGGTCTTGCAAGGTCAAGAAATAGGCCCTTTGAGATCCCTGGCTGGAAAATCTGATTTCAATCTTGGTTCTTGGGGGAAACCCAATCTTGGTTGCAACTTATTCAATATGTATCAGAAACCAAAGCCCAATTTCTACCCACTAGCTTCAGAAGGCATCAGAAACATGTATTTTCCTTACAATGACATCTACAAAGGTGGCCAAGATCCCGTAATGCTTTCTTATGCAAGTAATTTCCCAAGAGAAAACGTTCCATTCAATCCATCTTCTATCCGGAGTGGGGTTATCGGCACTGAAGTTAGAAAGCTAAACATACCAAATGAACCGAAGCCTCCGGAAAATATATCTGCTCCTCCCAATTTAGAGACCAATCTGAAACATCAGAAAGATGACACTTTTAGTGGAACTGCAGCTGGCTGTAAACTGTTCGGGTTTTCCTTGACTGGAGAAACTCCTCCAAACTCACAAAATTCTGGTAAGAGGAGTTGTACTAAGGTTCACAAGCAAGGCAACTTAGTGGGACGAGCCATTGATCTCTCAAGACTGAATGGTTATGGTGACCTGTTTAGTGAACTAGAGCGTTTGTTTGGTATGGAAGGCCTTTTACGAGATCCTGACAAAGGTTGGCAGATCTTGTATACTGATAGTGAGAATGACATGATGGTTGTTGGGGATGATCCATGGCATGAATTCTGTAACGTCGTCTCCAAGATTCATATATACACCCAAGAAGAAGTGGAGAAGATGACCATTGGGATTATCAGTGATGATACACAAAGTTGCTTGGAAGAAGCTCCAGTGATACTGGATGTGTCCAAGTCTTCGTCGGTGGGCCAGCCAGATAGTTCTCCAACAGTGATTAGAATCTGA 2397 0.4476 MEIDLNHAVTEVEKHAFCNGDCDKASCVCCLSSSSSSSSASNSSASPDSSSIYLELWHVCAGRLTSLPKKGNVVVYFPQGHLEQAASSSPFPPMDISTFDLPPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELAGINLEGKELEGLGVDEEGGGGSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGEGGELRLGIRRAVRPRNGLPDSIIGNQNSYPNVLSLAANAVATKSMFHVFYSPRASHAEFVIPYQKYVKSITNPISIGTRFKMRYDMDDSPERRSSGVVTGIGDLDPYRWPNSKWRCLMVRWDDDIVSDPQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQATPPNNPINGGGGFLDFEESVRSSKVLQGQENVGFVSPLYGCDKVNRSLDFEMQNPSLASTGIEKANFCEFMRAPPTTYTGFLESDRFPKVLQGQEIGPLRSLAGKSDFNLGSWGKPNLGCNLFNMYQKPKPNFYPLASEGIRNMYFPYNDIYKGGQDPVMLSYASNFPRENVPFNPSSIRSGVIGTEVRKLNIPNEPKPPENISAPPNLETNLKHQKDDTFSGTAAGCKLFGFSLTGETPPNSQNSGKRSCTKVHKQGNLVGRAIDLSRLNGYGDLFSELERLFGMEGLLRDPDKGWQILYTDSENDMMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEEAPVILDVSKSSSVGQPDSSPTVIRI* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0328 798 Gene3D - 666 759 - -
Vvi6g0328 798 FunFam Auxin response factor 330 402 - -
Vvi6g0328 798 FunFam Auxin response factor 665 759 - -
Vvi6g0328 798 ProSiteProfiles PB1 domain profile. 670 754 IPR000270 GO:0005515
Vvi6g0328 798 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Vvi6g0328 798 Pfam Auxin response factor 293 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi6g0328 798 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vvi6g0328 798 Pfam AUX/IAA family 666 754 IPR033389 -
Vvi6g0328 798 SUPERFAMILY DNA-binding pseudobarrel domain 159 276 IPR015300 -
Vvi6g0328 798 SUPERFAMILY CAD & PB1 domains 666 749 - -
Vvi6g0328 798 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 759 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g0328 798 SMART B3_2 167 269 IPR003340 GO:0003677
Vvi6g0328 798 Gene3D - 330 402 - -
Vvi6g0328 798 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vvi6g0328 798 Gene3D - 165 269 IPR015300 -
Vvi6g0328 798 FunFam Auxin response factor 165 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0328 Vvi-Chr6 3880033 3888095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0328 49 798 B3 DNA Binding Superfamily AT5G60450 65.395 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi6g0328 AUX_IAA 7.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0328 - - vvi:100243320 1567.36