Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0324 ATGAGCGTGATCGACATTATTTTCCGAGTTGATCAAATATGCAAGAAATTCGACAAGTACGATGTCGACAAGCAGCGCGATCTCAATGCCTATGGTGACGATGCCTTTGCTCGCCTCTACGCCAGCGTCGAAGCTAACATTGAATCGGCTCTTCATAAATCTGAAATTTCTCTGATAGAGACGAATAGGGCTGCTGCCGTTGCACTGAATGCTGAGATTCGTCGAACCAAGGCTCGGTTGCTAGAGGAAGTTGTCAAGCTGCAGAAATTGGTGCTCAAAAAGGTTAAAGGGCTCACAAAAGAAGAACTAAGTATCCGTAATGATTTGGTCCTGGCTCTACCAGAAAGAATTCGAGCAATACCAGATGGGAGCATGGCAGGAGCCAAACAAACTGCAAATTGGGCAGCTTCGGCATCTCATAAAAACATCATGTTTGACTCATCAGATGGAAATTTTGACAGCGAGTTTTTCCAACAAAGTGAAGAATCAAGTCAGTTTAGACAAGAATATGAAATGAGGAGAATGAAACAGGATCAAGGTCTAGATGTTATATCAGAAGGGTTAGACACACTGAAGAATTTGGCCAATGATATGAATGAGGAATTAGATCGGCAAGTTCCACTGATTGATGAAATTGATACAAAGGTAGACAAGGCAACATCTGACATTAAGAATACTAATGTTAGACTCAAGGAAACCGTTACCAAGATGAGGTCCAGTCAAAACTTCTGTATTGACATAATTCTTCTGTGCGTAATTCTGGGAATCGCTTCCTATTTATACAATGTATTGAAATGA 798 0.411 MSVIDIIFRVDQICKKFDKYDVDKQRDLNAYGDDAFARLYASVEANIESALHKSEISLIETNRAAAVALNAEIRRTKARLLEEVVKLQKLVLKKVKGLTKEELSIRNDLVLALPERIRAIPDGSMAGAKQTANWAASASHKNIMFDSSDGNFDSEFFQQSEESSQFRQEYEMRRMKQDQGLDVISEGLDTLKNLANDMNEELDRQVPLIDEIDTKVDKATSDIKNTNVRLKETVTKMRSSQNFCIDIILLCVILGIASYLYNVLK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0324 265 PANTHER SYNTAXIN 38 253 IPR045242 -
Vvi6g0324 265 Pfam SNARE domain 208 257 IPR000727 -
Vvi6g0324 265 CDD SNARE_Qc 176 232 - -
Vvi6g0324 265 FunFam Putative syntaxin-71-like 171 232 - -
Vvi6g0324 265 SUPERFAMILY SNARE fusion complex 164 231 - -
Vvi6g0324 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi6g0324 265 Coils Coil 70 90 - -
Vvi6g0324 265 SMART tSNARE_6 166 233 IPR000727 -
Vvi6g0324 265 Gene3D - 171 232 - -
Vvi6g0324 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0324 Vvi-Chr6 3830035 3835134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0324 1 265 SNARE and Associated Proteins AT3G09740 71.536 2.60e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0324 K08506 - vvi:100258712 473.781