Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0323 ATGGAGAGAGAACCTAATTCAAGTTTCCAGTTTCCCCCTGGTTTCCGGTTCCATCCTTCTGACGAAGAGCTGATAGTCCATTACTTGCAAAAGAAAGTGACGTCACATCCACTCCCAGCATCCGTGATAGCTGAGATAGATCTGTATAAGTATAATCCATGGGAGCTACCTAAGAAGGCTTTGTTTGGAGAAGAAGAATGGTACTTCTTCAGTCCAAGAGATCGTAAGTACCCAAACGGAGTAAGGCCTAATAGAGCAGCAGCTTCAGGTTTTTGGAAGGCAACTGGAACTGACAAGCCTATTCTTACTTCCTGTGGATCAAAAAGCATTGGGGTGAAGAAAGCTTTGGTCTTCTATATTGGTCGGCCTCCAAGGGGAGTGAAGACTGAATGGATCATGAATGAGTACAGATTGCTCAACACAATGAACCGACCAGGGTCAAGGTCAAAAGGATCCATGAGATTGGATGATTGGGTACTATGCCGGGTCCGCCATAAAGGCAACATGCCAAAGAACACATGTGAAGGTCAAGACAGTCCTAGCACAGAATTGATAAGCTACTTACCAAAGATTGAGGAGCAACAACCTATGCATACAAAGCATAATGACATGGACACAGGTTATCTCTACAATCATTGCGAATTAATAGCTTCCATACTTGCTGGTCATCCTCTTCCTCATAATGAAACCATTTCTAATGTAACCTTCAAAGGGAGCAACAACAGCAATAGCCATGGTTCAGTTCATGAAGATGGTTCAGATAAAGTGAATTTGCCAATTACAGTTTCTTCCTTTGACAGTTTTTTCAACCCATTGAATGGGAACTCCACAGAGAAACATAGGTACGAAAATCCCCCTCCATCTCAGAAGATGCTAACTAGCAACAATGAAGATGAGAGTCTTTCACCTCACAAGACATCAACCAACAATCATATGAATTTCCATAGCCAAAGCCAGTCTCAAGTCAGCATCATCAATTCTAATCCCTCAAATCCCATCTGCTTACAGAAGCCTAATCATGTGCTTCACAGACAGATATCTACAGTAATGAACTGGCCCTTCACAGAAGGAAATGGTTCTTAA 1083 0.4238 MEREPNSSFQFPPGFRFHPSDEELIVHYLQKKVTSHPLPASVIAEIDLYKYNPWELPKKALFGEEEWYFFSPRDRKYPNGVRPNRAAASGFWKATGTDKPILTSCGSKSIGVKKALVFYIGRPPRGVKTEWIMNEYRLLNTMNRPGSRSKGSMRLDDWVLCRVRHKGNMPKNTCEGQDSPSTELISYLPKIEEQQPMHTKHNDMDTGYLYNHCELIASILAGHPLPHNETISNVTFKGSNNSNSHGSVHEDGSDKVNLPITVSSFDSFFNPLNGNSTEKHRYENPPPSQKMLTSNNEDESLSPHKTSTNNHMNFHSQSQSQVSIINSNPSNPICLQKPNHVLHRQISTVMNWPFTEGNGS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0323 360 FunFam NAC domain-containing protein 72-like 20 171 - -
Vvi6g0323 360 ProSiteProfiles NAC domain profile. 11 166 IPR003441 GO:0003677|GO:0006355
Vvi6g0323 360 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
Vvi6g0323 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 303 - -
Vvi6g0323 360 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vvi6g0323 360 SUPERFAMILY NAC domain 8 166 IPR036093 GO:0003677|GO:0006355
Vvi6g0323 360 MobiDBLite consensus disorder prediction 272 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0323 Vvi-Chr6 3826347 3828617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0323 10 175 NAC Transcription Factor Family AT1G61110 67.630 6.12e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0323 NAM 8.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0323 - - vvi:100253566 740.725