Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0322 ATGATGGCTGAAGATGGGCTCACACTTCCCTCTTCCATCAGAGGTTTTGTTCAAGAACCAAATTCAAACCCTAACCCTAACCCTAGTGCAAATCCAGTGAAGAAGAAGAGAAATTTACCAGGAACGCCAGATCCAGAAGCAGAAGTCATCGCTCTATCACCAAAATCACTCATGGCCACGAACCGATTCATCTGTGAAATCTGTAACAAGGGTTTCCAGAGAGACCAGAACTTGCAGCTTCACAGGCGAGGCCACAATCTTCCATGGAAGCTCCGGCAAAGAACAAGCAAGGAGGTCCGGAAGAAGGTGTACATATGCCCGGAAAAGTCCTGTGTGCACCACAATCCAACCAGGGCCCTAGGAGACCTCACCGGAATAAAGAAGCATTACAGTAGAAAACACGGTGAGAAGAAGTGGAAGTGCGAGAAATGTTCCAAGAAATATGCAGTTCAGTCAGATTGGAAAGCTCATAGTAAAATTTGTGGCACCAGAGAGTACAAATGCGACTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTAGCTGAGGAAAGTGCCAGGCTCACTTCAGTTTCAGCACCGAATCCAATCTTCAGAAATGAGTTGATGAATGGGAGCATTAGCAACCCACAAGCCCACATAATCCCCCAATTTTCCTCAGTTTTTCGGCCTGAATTTGTGGGCTCGGAGCAGCTGGTTGGGCATCTCAATGCAGATGGGCAGAAGCCAAGGTTGCCACTGTGGCTGGACCATGCCAATTCCCACCTCAACAACCCCATTGGGGTTAACACTAATGGTTCCTTTTTGGCACCGACATCCGCTGGGTTGCCTGAAATGGTGCAAACAGCGCCCATGAGTATGTATGGATCACCGGCATCATCACAGAATCAGTGGCTCCAAAGGTGTTCAGAAGCGTCATTTACTTCATCCACATTGCCACGGGTGTTAAAGGAGGAGGAAGAGAACAAAGGAAATTTGTCTGAGAGCATAACTTCCTTGTTCTCAAGTAATCAGAATCAACAAGAAAGCTCGGCTCACATGTCAGCAACCGCACTCTTGCAGAAAGCTGCCCAAATGGGGTCTACAAAGAGCAACTCAGCCTTCTTCAGTACTACAGGATTCGGTTCCATCAACTCATCCCTCTCCAATACTACGCCCTTCAGCTCTTATCCCCATGGCAGAAGCAACAACCAAGTCCACAAGTTTCTTATCAGGCAGTCAAACCAATCCGACAGCATGAACCAACTCATCAACTCAACATCACCCTCCTCCACCATGGGAGATGGACTGCTGATGGGTGATATGAACTCAACCCCATTAGTGGACACTGCCAAGAACAACATGGACCATTTTCTGATGGTCCCATCAAATCCCAAGCAAGCCCAACAGATTGCAGGGAAGTTCCATGCAAGTTCCAATGAAGTTGAACGCGGTCTAACCAGAGATTTTCTGGGTGTGGGAAGTGATGCAAGCAGACCCTTCTTGCAACAAGAGCTGGCTAAGTTTGCTTCAATGGGTTCAGCCATGGGCATGAGCCAATACAGTGGAAACCACTGA 1584 0.4804 MMAEDGLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSVFRPEFVGSEQLVGHLNADGQKPRLPLWLDHANSHLNNPIGVNTNGSFLAPTSAGLPEMVQTAPMSMYGSPASSQNQWLQRCSEASFTSSTLPRVLKEEEENKGNLSESITSLFSSNQNQQESSAHMSATALLQKAAQMGSTKSNSAFFSTTGFGSINSSLSNTTPFSSYPHGRSNNQVHKFLIRQSNQSDSMNQLINSTSPSSTMGDGLLMGDMNSTPLVDTAKNNMDHFLMVPSNPKQAQQIAGKFHASSNEVERGLTRDFLGVGSDASRPFLQQELAKFASMGSAMGMSQYSGNH* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0322 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Vvi6g0322 527 FunFam protein indeterminate-domain 12-like 42 110 - -
Vvi6g0322 527 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Vvi6g0322 527 SMART c2h2final6 63 85 IPR013087 -
Vvi6g0322 527 SMART c2h2final6 104 134 IPR013087 -
Vvi6g0322 527 SMART c2h2final6 139 159 IPR013087 -
Vvi6g0322 527 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Vvi6g0322 527 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Vvi6g0322 527 MobiDBLite consensus disorder prediction 14 32 - -
Vvi6g0322 527 MobiDBLite consensus disorder prediction 1 45 - -
Vvi6g0322 527 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vvi6g0322 527 Gene3D Classic Zinc Finger 115 196 - -
Vvi6g0322 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 509 IPR031140 -
Vvi6g0322 527 Gene3D Classic Zinc Finger 41 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0322 Vvi-Chr6 3816003 3817924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0322 33 392 IDZ Gene Family AT3G45260 52.493 2.69e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0322 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0322 K25870 - vvi:100248459 1051.97