Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0318 ATGCCAACGAGTGTGTCTGAGTTCGAGTTGGAGCTTGGCGAGATGAGAAGCAGACGACTTATCGAAAAGCCCAGTGGAAGAAGAAAAGGCAAGCAGCTGAGCATCAGCAAGATCAACCATGAACTTTCAGAAATCGTAACCATCCCCTCCTCCAGCTCCGACGACGAAGCAAATACCACTTCCCTGCACCAGAAGGCGGACGAGACCCTCCTGCACCAGAAGAAGAAGAAGAAGGAACCGAAGGTGGAAACGAAGAAGAAGACGGGGGCGAAGGTGGAAACGAAGAAGAAGACGGGGGCGAAGGTGGAAACGAAGAAGAAGACGGGGGCGAAGGTGGAAACTAAGAAGAAGAAGGAGGAGAAGGAAGATGAGAGCGCGGCTCATCTGAAGAAGAGAAAGAACAAGGGGGAAGAGAGCGTGGCCCATAAGAAGAAGAAGCTGAAGAAGGAAGCGGGGAAAGGGAGCTTAGGGCAGAAGAATGAGAAGGGAGAGGGAGAGAGTGTGGCACCTAAGAAGAAGAATGGGAAGGGGCAGGAAGAGAGCAAGGGGACTCTGAAGAAGAAGAGGAAGAAGGAGGATGAGGAAGAGGGCGTAACGCTTCCGAAGGCGAAGGGGAAGGGGAAGGGGGAGGAAGAGAACAAGGGGAGTATGAAGAAGAAGAAAAAGGAGGAGGAGGACACAGGGGGCGTGGTGAATCAGAAGAAGAAGGGGAAGGGGGAGGGAGAGAGCAGCAAGGCGAATCTGAAGAAAAAGAAGAAGAAAGGGGAAGGGGAAGGGCGAGAGGGCGCTGCCACTCAGAAGGAGAATCAGAAGAAGGCGGGTGAGGAAGTGACACCGGCGCACTTAGAGATCAATGATAAGAAGAATGAAAAGAAGAAGAAGAAGGAGAATAAGGGGAACGAGGAAGAAAAATTGGCGAATTTGAAGAGCAATGAGAAGAAGAATGAGAAGGATGAAGAGAAGAAGAAAAAGGGCGGGGCACATTGTGGATACAATTTTCCAATGAGCAGAATAGAGAGGATTGTACGGAGCGATTGCGACGATGTCCGCATTTCCCAAGAAGCCCTCTTTCTCATCAACAAAGCTTCTGAGGAGTTCCTTCAACAATTTGTTAATGATGCATATGCATGTTCTGTTAAGGATCGCAAGAATTATGTTTCTTACAAGCACATAGCATCAGCAGTTAGCAAATGCAAGAGATTTGACTTTCTATCAGATTTTGTTCCTGAGAGAGTATCTGCTGAGAAGGCTTTAGCAGAGAGATCAGCTAAGACATGA 1278 0.4883 MPTSVSEFELELGEMRSRRLIEKPSGRRKGKQLSISKINHELSEIVTIPSSSSDDEANTTSLHQKADETLLHQKKKKKEPKVETKKKTGAKVETKKKTGAKVETKKKTGAKVETKKKKEEKEDESAAHLKKRKNKGEESVAHKKKKLKKEAGKGSLGQKNEKGEGESVAPKKKNGKGQEESKGTLKKKRKKEDEEEGVTLPKAKGKGKGEEENKGSMKKKKKEEEDTGGVVNQKKKGKGEGESSKANLKKKKKKGEGEGREGAATQKENQKKAGEEVTPAHLEINDKKNEKKKKKENKGNEEEKLANLKSNEKKNEKDEEKKKKGGAHCGYNFPMSRIERIVRSDCDDVRISQEALFLINKASEEFLQQFVNDAYACSVKDRKNYVSYKHIASAVSKCKRFDFLSDFVPERVSAEKALAERSAKT* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0318 425 FunFam Nuclear factor Y subunit C10 289 410 - -
Vvi6g0318 425 SUPERFAMILY Histone-fold 313 410 IPR009072 GO:0046982
Vvi6g0318 425 MobiDBLite consensus disorder prediction 19 325 - -
Vvi6g0318 425 Coils Coil 284 318 - -
Vvi6g0318 425 MobiDBLite consensus disorder prediction 67 325 - -
Vvi6g0318 425 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 332 395 IPR003958 -
Vvi6g0318 425 Gene3D Histone, subunit A 283 410 IPR009072 GO:0046982
Vvi6g0318 425 MobiDBLite consensus disorder prediction 36 66 - -
Vvi6g0318 425 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 272 422 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0318 314 392 CCAAT-HAP5 Transcription Factor Family AT1G07980 44.304 2.82e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi6g0318 CBFD_NFYB_HMF 1.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0318 - K03506 vvi:100243337 580.482