Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0314 ATGTTCAGTAAGGACTACTCTATTGCTAGAGTGACAGAAATGGGCTGCTGTGGTTGCTTTGGATTTGTGAGAAAACCCGAAAGTTTATCAAGGCCTGGTTCTGGCTCAACCAATTGCCTTTCCCAGGAGTTTTTGTTGGAAGAAGATATAGAAGAAGTTGATGATCGATCATACAATGGCGAGGTTTCTGATACTGCACATGGAGATGATGGTGAGTTGCAAAGCCGTGTCCAACGTTCTGAAGAAATTCTTATGTTGAGAACTCAAAATGGAATGATTTGCCGTGAATTTCCCGTCAAGGAAACACACAAACTTATTCGCTCAGAGGATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTGGTTCTATATCGGAGCCTCAAAGATGGGAATCATTATGCAATTAAGGCCTTTCACAAGTCTCATTTGTTAAAGCTGCGAGTTGCTCCTTCAGAAACAGCCATGACTGATGTTCTTCGGGAGGTTTTGATCATGAAAATGTTGAACCATCCAAATATAGTCAATCTCATTGAGGTGATTGATGACCCAAGCACAGATCACTTCTATATGGTTCTTGAATTTGTGGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCCCCAGGTGGCATAGGAGAAAATACTGCAAGAAAGTACTTGAGAGATATAGTCTCAGGGCTGATTTACCTCCATGCTCATAATATAGTGCATGGGGACATTAAACCAGACAATCTTTTGGTTACTCGCACTGGTACAGTGAAGATAGCGGATTTTAGTGTCAGCCAGGATGATAATGATGAGCTCCGCCGTTCTCCTGGCACTCCTGTTTTTACTGCACCAGAGTGCTGTTTAGGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCTGTTGGAGTTACCTTGTACTGTATGGTGCTTGGACAATACCCATTTCTTGGAGAATCGCTGCAGGATACGTATGATAAGATTGTCAATAACCTATTATCTCTCCCGGATAACATTAACCCCCAGTTAAGGAACCTACTGGAGGGGCTTCTCTGCAAAGACCCAAATGAAAGGATGACGTTGGATGCTGTTGCAAAGCATGCCTGGGTTATTGGAGAAGAAGGGCCAATTCCTCAGTATTTGTGTTGGTGCAGGCGAAATATACTGCTAAGGGAAGATCCTGTTGGAAATGGGAAGAGTACTCTCACATGA 1236 0.4337 MFSKDYSIARVTEMGCCGCFGFVRKPESLSRPGSGSTNCLSQEFLLEEDIEEVDDRSYNGEVSDTAHGDDGELQSRVQRSEEILMLRTQNGMICREFPVKETHKLIRSEDENGNKTINEYVREYKIGSGSYGKVVLYRSLKDGNHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLNHPNIVNLIEVIDDPSTDHFYMVLEFVEGKWVCEGSGPPGGIGENTARKYLRDIVSGLIYLHAHNIVHGDIKPDNLLVTRTGTVKIADFSVSQDDNDELRRSPGTPVFTAPECCLGLTYHGKAADTWAVGVTLYCMVLGQYPFLGESLQDTYDKIVNNLLSLPDNINPQLRNLLEGLLCKDPNERMTLDAVAKHAWVIGEEGPIPQYLCWCRRNILLREDPVGNGKSTLT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0314 411 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 80 380 - -
Vvi6g0314 411 FunFam Serine/threonine-protein kinase GRIK2 110 408 - -
Vvi6g0314 411 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vvi6g0314 411 SMART serkin_6 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0314 411 Pfam Protein kinase domain 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0314 411 Gene3D Transferase(Phosphotransferase) domain 1 110 389 - -
Vvi6g0314 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vvi6g0314 411 CDD STKc_LKB1_CaMKK 126 378 - -
Vvi6g0314 411 SUPERFAMILY Protein kinase-like (PK-like) 115 385 IPR011009 -
Vvi6g0314 411 ProSiteProfiles Protein kinase domain profile. 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0314 411 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0314 Vvi-Chr6 3720399 3728147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0314 115 377 CBL-interacting serine-threonine protein kinases AT5G35410 34.211 4.62e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vvi6g0314 Pkinase 6.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0314 K00908 - vvi:100260436 841.647