Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0312 ATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGCCACCGCAACCACCCAGCTCTGCCGCCTCAGCTATCACCCCAACCTGAAATTACTGCAAACAGATACGTTTTTGCCGCTGCCACAGCTTACACATCAGCGTACCCTAACCCTAATCAACCTTACTACTATAATTACAATGGTCACTACCCTCCTGTGCCGGTACCGTTATCGGGTTCGTACACCCGCCTTCATCGCGCTGGCGGTGCAATCCCAAATTGGGTTGGTGGGCACCAACCTTGCGGGGTGGCTCCGCCCCCACCTGCCCCTTATGTTGAGCATCAGAAGGCAATTACTATCCGAAACGATGTGAATATTAAAAAAGAAACATTGAGAGTTGAACCAGATGAAGAGAATCCGGGGAAGTTTCTGGTTGCTTTCACTTTTGATGCTACTGCAGCTGGAAGCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTACAGTGAAGGAAGGCGTGATTGAACCTGTGACGGTGTCTTTCCAGCAAGGTCTTGATCAGAAGTTCAAACAACCTTCTGGAACTGGGATTGACTTCTCAATGTTTGAGGAAACAGAGTTAATGCAGGAGAGTGATATCAAAGTTTGTCCTCTCCTGGTGAAGGCTGGGGCATACCCATTGGACCATAGCCAATCAGAAGGAAATCTGACTGGGAATTCTCAGATCACCCAGGCTGTGTTTGAGAAGGAGAAAGGTGTACAACAAGTGCGGGTTGTGAAACAGATACTGTGGGCAGAGGGGATGAGATATGAGCTGCAGGAGATTTTTGGGATTGGGAATTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGTGTATGTGTGGTGGGTGTGCCAAGGTTTTGAGGTTCCAGATGAACCGATGCCCTATTTGCCGACAACCAGTTGAGCAGCTCCTAGAGATCAAGGTAAACAACAAATCTGACGTGTGA 1050 0.4876 MGNTGSSRRRHQRSHRNHPALPPQLSPQPEITANRYVFAAATAYTSAYPNPNQPYYYNYNGHYPPVPVPLSGSYTRLHRAGGAIPNWVGGHQPCGVAPPPPAPYVEHQKAITIRNDVNIKKETLRVEPDEENPGKFLVAFTFDATAAGSITVVFFGKEGISGDLITVKEGVIEPVTVSFQQGLDQKFKQPSGTGIDFSMFEETELMQESDIKVCPLLVKAGAYPLDHSQSEGNLTGNSQITQAVFEKEKGVQQVRVVKQILWAEGMRYELQEIFGIGNSVDDNADGTDSGKECVICLSEPRDTTVLPCRHMCMCGGCAKVLRFQMNRCPICRQPVEQLLEIKVNNKSDV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0312 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Vvi6g0312 349 PANTHER MAHOGUNIN 1 345 IPR045194 GO:0061630
Vvi6g0312 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Vvi6g0312 349 SUPERFAMILY RING/U-box 292 338 - -
Vvi6g0312 349 CDD mRING-HC-C3HC5_MGRN1-like 291 332 IPR045195 -
Vvi6g0312 349 MobiDBLite consensus disorder prediction 1 29 - -
Vvi6g0312 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Vvi6g0312 349 SMART ring_2 293 331 IPR001841 -
Vvi6g0312 349 FunFam probable E3 ubiquitin-protein ligase LOG2 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0312 Vvi-Chr6 3700776 3704281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0312 101 312 C3H Transcription Factor Family AT3G09770 60.731 8.98e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0312 - - vvi:100250186 669.463