Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0308 ATGAGAGGTGAGGAAAAACCAGTGGCTGAAGGGCATGATGTGGATGAAGGTGAAAGAGCGGTTGCTATTCCAATTCAGGAGGTTGAAGATTCAACTGGAATAACTGAAGAAACACCACATTTTCAGCAATGGAGGCGGCAAAACCTCTTCCTAGAGATACCCTCAAGAGAAATGGAAGCCTCCTCTCAAGATTCTGTTAGAATAAAGATGCCTCCAACACCAAGTCCGACTCCAAAAAAAGTAAATTTCTTTCTGACACCTAGCCCAAGTGATACAAGAGTAACTGGGTCTCCAGGTCCTTCTGCTACTAAAGGTAAATCATCCAAAAAAAGCCTCCTACCAAAATTGAGCTTTAAGAATCGGAGTGCTACTTCGGATAGCGATAAGGCTGCTAACCTAGCTCTAGGAGGTTCATCTACAACCTCACGAGAAAAACCCTCAATCTCAAGGTCATTGTCACTTTCAAAGATATTCACTCCTAAAATGAATAGAACATCATCTCTACCTGGTACTCCACTTGAGCATTCAAACCCAGAATCAGTAAGTGGAGGAAGCATAGGCAGTGCACTGAAATCAGATACAAGAGGAGTCCATCGGCGAATATCTCGCTCACTTTCGGTCCCTGTAAACAATAAAGATAGAAGCATAAAGAGAATGGATTCATTTTTTCGTGTAATTCCCTCAACTCCCCGGGTGAAGGAATTGGATGCAATGACAATGAATTCAAGTCCAGCAGTGGAAGCAGAAAACAATGAAGCTGATGGTGAGGATATACCTGAAGAAGAGGCTGTGTGCAGGATTTGTTTGGTTGAACTGTGTGAAGGTGGTGAGACTCTCAAGATGGAGTGCAGCTGCAAAGGTGAACTTGCTCTAGCCCACCAGGAGTGTGCTGTCAAATGGTTTAGGATCAAGGGTAACAAAAACTGTGATGTATGCAAGCAAGAGGTTCAAAACCTGCCTGTCACTCTTTTGAGGATCCAGAGCATTCAAACTCGAAATAGTGGATCAAATAGAGCTCATCAGACAGAAGTTAATGGATACAGGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTTTGTTTTCTCGAGCAGCTTCTGGTTGGAAATATGGGTACTAGTGCAATAGCCATTTCTCTTCCCTTTTCTTGTGTACTGGGTCTTCTTGCCTCCATGACTGCCTCAACCATGGTGAAGAGAAGATTTATCTGGGTTTATGCATCTATTCAATTTGCATTGGTGGTTCTCTTCGCGCATATTTTTTATTCCTTGGTTCGTGTACAAGCCGTTCTATCCATTCTCCTCTCTACATTTGCCGGGTTGGGCATTGCAATGAGTGGGAGTTCTATTATTGTGGAGCTGTTGAGATGGAGACTCAGATGGCATGCCTGGTCAGAGCAGCAGCAGCAACAGCAGCAGCAGCGTCAACGTTCCCAGGTGGGTGCGCAACCAGGCCAAGCAGCTGAGTCTGCTGCAGCTTCCCACCATGCAAATTCACATCACCAGCGCCACCATACTGAATCTGAAAACCCAGAGACTTTTAGTAGGAGCTGA 1569 0.4481 MRGEEKPVAEGHDVDEGERAVAIPIQEVEDSTGITEETPHFQQWRRQNLFLEIPSREMEASSQDSVRIKMPPTPSPTPKKVNFFLTPSPSDTRVTGSPGPSATKGKSSKKSLLPKLSFKNRSATSDSDKAANLALGGSSTTSREKPSISRSLSLSKIFTPKMNRTSSLPGTPLEHSNPESVSGGSIGSALKSDTRGVHRRISRSLSVPVNNKDRSIKRMDSFFRVIPSTPRVKELDAMTMNSSPAVEAENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFRIKGNKNCDVCKQEVQNLPVTLLRIQSIQTRNSGSNRAHQTEVNGYRVWHELPVLVIVSMLAYFCFLEQLLVGNMGTSAIAISLPFSCVLGLLASMTASTMVKRRFIWVYASIQFALVVLFAHIFYSLVRVQAVLSILLSTFAGLGIAMSGSSIIVELLRWRLRWHAWSEQQQQQQQQRQRSQVGAQPGQAAESAAASHHANSHHQRHHTESENPETFSRS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0308 522 SMART ringv_2 264 313 IPR011016 GO:0008270
Vvi6g0308 522 MobiDBLite consensus disorder prediction 1 41 - -
Vvi6g0308 522 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Vvi6g0308 522 CDD RING_CH-C4HC3_MARCH 265 313 - -
Vvi6g0308 522 MobiDBLite consensus disorder prediction 55 204 - -
Vvi6g0308 522 MobiDBLite consensus disorder prediction 475 522 - -
Vvi6g0308 522 MobiDBLite consensus disorder prediction 475 490 - -
Vvi6g0308 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Vvi6g0308 522 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Vvi6g0308 522 MobiDBLite consensus disorder prediction 79 189 - -
Vvi6g0308 522 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g0308 522 PANTHER OS02G0165000 PROTEIN 34 481 - -
Vvi6g0308 522 MobiDBLite consensus disorder prediction 507 522 - -
Vvi6g0308 522 SUPERFAMILY RING/U-box 261 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0308 Vvi-Chr6 3652493 3658105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0308 196 319 C3H Transcription Factor Family AT2G37950 32.558 6.44e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0308 - - vvi:100257089 946.806