Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g0308 | ATGAGAGGTGAGGAAAAACCAGTGGCTGAAGGGCATGATGTGGATGAAGGTGAAAGAGCGGTTGCTATTCCAATTCAGGAGGTTGAAGATTCAACTGGAATAACTGAAGAAACACCACATTTTCAGCAATGGAGGCGGCAAAACCTCTTCCTAGAGATACCCTCAAGAGAAATGGAAGCCTCCTCTCAAGATTCTGTTAGAATAAAGATGCCTCCAACACCAAGTCCGACTCCAAAAAAAGTAAATTTCTTTCTGACACCTAGCCCAAGTGATACAAGAGTAACTGGGTCTCCAGGTCCTTCTGCTACTAAAGGTAAATCATCCAAAAAAAGCCTCCTACCAAAATTGAGCTTTAAGAATCGGAGTGCTACTTCGGATAGCGATAAGGCTGCTAACCTAGCTCTAGGAGGTTCATCTACAACCTCACGAGAAAAACCCTCAATCTCAAGGTCATTGTCACTTTCAAAGATATTCACTCCTAAAATGAATAGAACATCATCTCTACCTGGTACTCCACTTGAGCATTCAAACCCAGAATCAGTAAGTGGAGGAAGCATAGGCAGTGCACTGAAATCAGATACAAGAGGAGTCCATCGGCGAATATCTCGCTCACTTTCGGTCCCTGTAAACAATAAAGATAGAAGCATAAAGAGAATGGATTCATTTTTTCGTGTAATTCCCTCAACTCCCCGGGTGAAGGAATTGGATGCAATGACAATGAATTCAAGTCCAGCAGTGGAAGCAGAAAACAATGAAGCTGATGGTGAGGATATACCTGAAGAAGAGGCTGTGTGCAGGATTTGTTTGGTTGAACTGTGTGAAGGTGGTGAGACTCTCAAGATGGAGTGCAGCTGCAAAGGTGAACTTGCTCTAGCCCACCAGGAGTGTGCTGTCAAATGGTTTAGGATCAAGGGTAACAAAAACTGTGATGTATGCAAGCAAGAGGTTCAAAACCTGCCTGTCACTCTTTTGAGGATCCAGAGCATTCAAACTCGAAATAGTGGATCAAATAGAGCTCATCAGACAGAAGTTAATGGATACAGGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTTTGTTTTCTCGAGCAGCTTCTGGTTGGAAATATGGGTACTAGTGCAATAGCCATTTCTCTTCCCTTTTCTTGTGTACTGGGTCTTCTTGCCTCCATGACTGCCTCAACCATGGTGAAGAGAAGATTTATCTGGGTTTATGCATCTATTCAATTTGCATTGGTGGTTCTCTTCGCGCATATTTTTTATTCCTTGGTTCGTGTACAAGCCGTTCTATCCATTCTCCTCTCTACATTTGCCGGGTTGGGCATTGCAATGAGTGGGAGTTCTATTATTGTGGAGCTGTTGAGATGGAGACTCAGATGGCATGCCTGGTCAGAGCAGCAGCAGCAACAGCAGCAGCAGCGTCAACGTTCCCAGGTGGGTGCGCAACCAGGCCAAGCAGCTGAGTCTGCTGCAGCTTCCCACCATGCAAATTCACATCACCAGCGCCACCATACTGAATCTGAAAACCCAGAGACTTTTAGTAGGAGCTGA | 1569 | 0.4481 | MRGEEKPVAEGHDVDEGERAVAIPIQEVEDSTGITEETPHFQQWRRQNLFLEIPSREMEASSQDSVRIKMPPTPSPTPKKVNFFLTPSPSDTRVTGSPGPSATKGKSSKKSLLPKLSFKNRSATSDSDKAANLALGGSSTTSREKPSISRSLSLSKIFTPKMNRTSSLPGTPLEHSNPESVSGGSIGSALKSDTRGVHRRISRSLSVPVNNKDRSIKRMDSFFRVIPSTPRVKELDAMTMNSSPAVEAENNEADGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFRIKGNKNCDVCKQEVQNLPVTLLRIQSIQTRNSGSNRAHQTEVNGYRVWHELPVLVIVSMLAYFCFLEQLLVGNMGTSAIAISLPFSCVLGLLASMTASTMVKRRFIWVYASIQFALVVLFAHIFYSLVRVQAVLSILLSTFAGLGIAMSGSSIIVELLRWRLRWHAWSEQQQQQQQQRQRSQVGAQPGQAAESAAASHHANSHHQRHHTESENPETFSRS* | 523 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g0308 | 522 | SMART | ringv_2 | 264 | 313 | IPR011016 | GO:0008270 | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Vvi6g0308 | 522 | Pfam | RING-variant domain | 265 | 312 | IPR011016 | GO:0008270 | |
Vvi6g0308 | 522 | CDD | RING_CH-C4HC3_MARCH | 265 | 313 | - | - | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 55 | 204 | - | - | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 475 | 522 | - | - | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 475 | 490 | - | - | |
Vvi6g0308 | 522 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 320 | IPR013083 | - | |
Vvi6g0308 | 522 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 257 | 319 | IPR011016 | GO:0008270 | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 79 | 189 | - | - | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vvi6g0308 | 522 | PANTHER | OS02G0165000 PROTEIN | 34 | 481 | - | - | |
Vvi6g0308 | 522 | MobiDBLite | consensus disorder prediction | 507 | 522 | - | - | |
Vvi6g0308 | 522 | SUPERFAMILY | RING/U-box | 261 | 316 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi6g0308 | Vvi-Chr6 | 3652493 | 3658105 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi6g0308 | 196 | 319 | C3H Transcription Factor Family | AT2G37950 | 32.558 | 6.44e-13 | 66.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g0308 | - | - | vvi:100257089 | 946.806 |