Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0303 ATGCGCTTGTACTGGTGGCAACAGCTGCCGCTGCTTATACTGATTCAACTTCTAGAACCCAATAGGCTGAGCCACAAACTGTATGCTGAAGCTTTACTTACTTGCAAGAGCACAGTTGGTAGTCCTCGGCAATTCAGTGGTAGGGCCGGGAGATACCCTTGCCTGAGACAATGGGTATTTGTCGATTATCATAAGCTGAAAGACCAAGGTGTTGTTTCTTTGTTCCCAAAAGCCCATCCTCCGTCTCCACAGATTAGATCAATCAACTTATCACCTTTTGCTCCAAAGTTGTATCTCTCACACAAATCAATTCAATCACAAGCAAAGCTGCATAAAACAAGAAATTTGAGGATAACAGCAGCAGTTGATGGGGATAGTGGTGTTCCTACACTTACGACTTTGCCACCAACTAATGTTAATAAACCAAGCAAGCAGAGACTAGCTGCCATTGTTGGGGGTATTGGTGCAGCCCTGCTTGTGGTGATAATTGTAGTACTTGTCTACATCTGCTTGATGCGTGTTAAAAGATTTATAAGGCGAACATCTGAGACAGCATCTTCTGTACCATCTCCTCCTGTTGAGTGGGATGGAAGGAACACTTCTCTACAGGCCAGTGCTCTCTCTCCATATGGTACAACGCATTTAAGACAATTAACAATCATGGAGCTGGAGCATGCTACTTGCAATTTCAGTCAAAATAATATTATAGGTGAAGGTGGATTTGGTTTAGTTTATAAAGGATTGCTTCTAGATGGATCTATTGTGGCTATCAAAAGACGCTTGCATACCCCAACTCAATTTTTTGCTCATGAGGTAAAACGCATAGCTCGTGTCCAGCACAAGCATCTTGTGAAGCTAATTGGTTATTGTGAAGAAAACCATCAACAGCTACTTGTAAATGACTATCTCCAGAATGGGAATGTTGGGAATCACCTGTATGATAGTGAAGGTTTACCGATGGGAAGGCTAGAAATATGGCAAAGGTTATCAATTGCACTTGGTGCAGCCAAAGGGCTTGAGCATCTTCACAGTTTGGTGCCTTCTTTCCTACACATGCACTTCAGAACAAGCAATGTACTTGTGGATGAAAACTTTACTGCTAAGGTTTCTGATTTTGGGCTTTCTAGATTGCTGGCTGAGGGTGCTCGAGCTGGATCCTCTTCTGCGATCGACTGCTTTCTTGACCCAGAGTTGAGATCATCAAAGGATTTTTCAGAGACAAGTGATGTGTACAGTTATGGGGTCTTCTTACTGGAGTTGATCAGCGGACGTGAAGCACATGGCAGGGATGAGCCAAACTCGCAACAAAATCTAGTACTGCATGCTAGATGCATCAATGATCTCAACAATTTCGTGGATAAGACATTAGGAGATCACACAATGGATGCAGTGAAAGAGATGATGGAGTTGGCTCTGGCATGTGTAGACATTAGTGTGAGAAGACCTACAATGAAGAAGGTGGTTGAAGAGCTAGAAAGGATTCAACACAGGGAAATTGGTCATCTGCAGGCCCAGTTGGGTGAGGAAATTGGTGTTGTAACACTAGGGAGTGAGCTCTTTAAATGA 1566 0.4323 MRLYWWQQLPLLILIQLLEPNRLSHKLYAEALLTCKSTVGSPRQFSGRAGRYPCLRQWVFVDYHKLKDQGVVSLFPKAHPPSPQIRSINLSPFAPKLYLSHKSIQSQAKLHKTRNLRITAAVDGDSGVPTLTTLPPTNVNKPSKQRLAAIVGGIGAALLVVIIVVLVYICLMRVKRFIRRTSETASSVPSPPVEWDGRNTSLQASALSPYGTTHLRQLTIMELEHATCNFSQNNIIGEGGFGLVYKGLLLDGSIVAIKRRLHTPTQFFAHEVKRIARVQHKHLVKLIGYCEENHQQLLVNDYLQNGNVGNHLYDSEGLPMGRLEIWQRLSIALGAAKGLEHLHSLVPSFLHMHFRTSNVLVDENFTAKVSDFGLSRLLAEGARAGSSSAIDCFLDPELRSSKDFSETSDVYSYGVFLLELISGREAHGRDEPNSQQNLVLHARCINDLNNFVDKTLGDHTMDAVKEMMELALACVDISVRRPTMKKVVEELERIQHREIGHLQAQLGEEIGVVTLGSELFK* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0303 521 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 157 499 IPR047117 -
Vvi6g0303 521 FunFam Protein kinase superfamily protein 303 509 - -
Vvi6g0303 521 Pfam Protein tyrosine and serine/threonine kinase 233 491 IPR001245 GO:0004672|GO:0006468
Vvi6g0303 521 Gene3D Transferase(Phosphotransferase) domain 1 303 509 - -
Vvi6g0303 521 SUPERFAMILY Protein kinase-like (PK-like) 209 497 IPR011009 -
Vvi6g0303 521 FunFam receptor-like serine/threonine-protein kinase NCRK 204 302 - -
Vvi6g0303 521 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Vvi6g0303 521 ProSiteProfiles Protein kinase domain profile. 230 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0303 521 Gene3D Phosphorylase Kinase; domain 1 196 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0303 Vvi-Chr6 3602531 3607207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0303 143 494 Receptor kinase-like Gene Family AT1G79620 35.165 3.27e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vvi6g0303 PK_Tyr_Ser-Thr 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0303 - - vvi:100241691 969.918