Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0300 ATGACGAAAGACGTTGAAACCTCGGGACAAGAGTTTTCGAACAAGGACTACCATGATCCACCTCCGGCGCCGCTGATCGACCCAGATGAATTAACACAATGGTCCTTATACAGAGCCATCATCGCCGAGTTTATCGCCACCCTGCTTTTCCTCTACATCACTGTCCTAACAGTGATCGGATACAAGAGCCAGTCCGACACCGACCCATGCGGGGGCGTGGGCATCTTGGGTATCGCCTGGGCCTTCGGCGGAATGATCTTCATCCTAGTCTACTGCACCGCCGGCATCTCCGGAGGACACATAAACCCGGCGGTGACCTTTGGGCTGTTCTTGGCGAGGAAGGTGTCGCTGGTGAGGGCTCTCATGTACATGATAGCTCAGTGCCTGGGTGCAGTCTGCGGTGTGGGCTTGGTGAAGGCGTTTCAGTCTTCGCTCTACAATAGGTACGGTGGGGGAGCAAACGAGCTGGCTGGTGGCTACAACAAGGGCGTGGGATTGGGTGCTGAGATCATCGGCACCTTTGTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAGAGGAACGCCCGAGACTCCCATGTTCCTGTTTTGGCACCACTGCCCATCGGATTTGCGGTGTTCATGGTTCACCTGGCAACAATTCCCATCACCGGCACCGGTATCAACCCGGCTAGAAGCTTCGGAGCTGCTGTCATCTATAACAACGACAAGGCCTGGGATGACCATTGGATGTTCTGGGTCGGACCATTCATTGGAGCTGCCATTGCTGCATTCTACCACCAGTATATTCTGAGAGCAGCGGCCATTAAAGCTCTAGGATCTTTCAGGAGCAATGCCTAG 843 0.5457 MTKDVETSGQEFSNKDYHDPPPAPLIDPDELTQWSLYRAIIAEFIATLLFLYITVLTVIGYKSQSDTDPCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALMYMIAQCLGAVCGVGLVKAFQSSLYNRYGGGANELAGGYNKGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWMFWVGPFIGAAIAAFYHQYILRAAAIKALGSFRSNA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0300 280 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Vvi6g0300 280 NCBIfam MIP family channel protein 42 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Vvi6g0300 280 FunFam Probable aquaporin PIP1-2 23 280 - -
Vvi6g0300 280 Pfam Major intrinsic protein 30 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0300 280 SUPERFAMILY Aquaporin-like 30 266 IPR023271 -
Vvi6g0300 280 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g0300 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 269 IPR034294 -
Vvi6g0300 280 CDD MIP 38 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0300 Vvi-Chr6 3578787 3579957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0300 1 280 Major Intrinsic Protein MIP AT2G37170 83.099 1.92e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0300 K09872 - vvi:100233093 571.237