Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0299 ATGCCGCCGAAGTTTGATCCCTCACAGGTCGTCGACGTCTACGTCCGGGTCACCGGCGGGGAGGTTGGAGCGGCGAGTTCACTCGCTCCCAAAATCGGCCCACTGGGTCTCTCTCCAAAGAAGATTGGAGAAGACATCGCCAAAGAGACAGCCAAGGTCTCCGTCGTCCCCTCTGCCGCTGCTCTGGTCATAAAAGCTCTAAAGGAGCCCGAGCGTGACCGCAAGAAGACCAAGAATATCAAACACAATGGCAACATATCGCTTGATGATGTGATAGAGATCGCGAAGATCATGAGGCCGAGATCGATGGCGAAGGATCTGAGTGGCAGCGTGAAGGAGATTCTCGGCACTTGCGTGTCCGTAGGATGTACGGTGGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCCGACGGCGACGTTGAGATCCCTCTGGACTGA 444 0.5563 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0299 147 SUPERFAMILY Ribosomal protein L11, C-terminal domain 57 130 IPR036769 -
Vvi6g0299 147 CDD Ribosomal_L11 13 125 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi6g0299 147 ProSitePatterns Ribosomal protein L11 signature. 112 127 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vvi6g0299 147 FunFam 60S ribosomal protein L12 63 145 - -
Vvi6g0299 147 Hamap 50S ribosomal protein L11 [rplK]. 9 127 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi6g0299 147 SMART rl11c 13 126 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi6g0299 147 Gene3D - 1 53 IPR036796 -
Vvi6g0299 147 Pfam Ribosomal protein L11, N-terminal domain 13 53 IPR020784 -
Vvi6g0299 147 Gene3D - 58 145 IPR036769 -
Vvi6g0299 147 Pfam Ribosomal protein L11, RNA binding domain 56 125 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vvi6g0299 147 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 68 IPR036796 -
Vvi6g0299 147 PANTHER 60S RIBOSOMAL PROTEIN L12 1 132 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0299 Vvi-Chr6 3568720 3569220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0299 1 145 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 79.268 3.38e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0299 K02870 - vvi:100853149 277.33