Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0290 ATGAAGGAGACCGAAAAGAGCTTGGACTCTCAACTGTGGCACGCCTGCGCCGGAGGAATGGTGCAGATGCCGTTAGTGAGCTCCAAGGTGTTTTACTTCCCTCAAGGCCACGCAGAGCACGCCCACACCAACGTCGATTTTGCGGCTGCACCGAGGATTCCAGCACTTGTGCTTTGCAGAGTTGCTGCCGTGAAATTCATGGCAGACCCTGAAACTGACGAAGTTTATGCTAAGATAAGATTGGTTCCGATTGCGAATAACGAACTTGATTGTGAGGATGATGGGGTTATGGGAAGTAGTGGGTCGGAAGCTCCAGAAAAGCCGGCTTCTTTTGCAAAAACATTGACACAATCTGATGCCAACAACGGTGGGGGCTTTTCAGTTCCACGATACTGTGCGGAAACGATCTTCCCCCGATTGGATTACTCGGCGGATCCGCCGGTGCAGACTGTGATTGCTAAAGATGTTCATGGTGAAATTTGGAAATTTAGGCATATCTATAGGGGGACGCCTCGCCGGCATTTGCTGACAACGGGTTGGAGCACTTTTGTGAATCAGAAGAAGTTGGTTGCAGGGGATTCGATTGTGTTCTTGAGGGCGGAGAATGGCGATCTCTGTGTTGGGATTAGGCGAGCCAAGAGGGGAATTGCGGGTGGACCTGAGTCTCCGTCTGGGTGGAACCCTGCATCACCGTATGCGGGATTTCCAAAGTTCTTGAGGGAAGATGAGAGCAAGCTGATGCGGAACGGAGTTGGTGGGAATTCGAATCCAGGCAGTGGTGGTGGTTTGAGGGGAGGTCGTAGGGTGAGGCCCGAATCAGTTGTTGAAGCTGCAACTCTTGCTGCCAATGGACAGCCCTTTGAAGTTGTTTATTATCCACGGGCAAGCACTCCGGAGTTTTGTGTTAAGGCTTCAGGTGTGAGGTCAGCCGTTAGGATCCAGTGGTGCTCTGGGATGAGGTTCAAAATGCCATTTGAAACCGAGGATTCTTCTAGGATAAGCTGGTTCATGGGAACCATTTCCTCTGTTCAGGTTGCCGACCCCATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAACCAGATTTGCTACAAAATGTGAAGCGGGTCAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCCATCATCCATCTGTCACCCTTCTCACCACCAAGAAAGAAGTTGCGGATACCACAACACCCAGACTTTCCCTTTGACGGCCAATTTCCAATGTCGTCATTTTCAAGCAACCCCCTCGGGTCCAGCAGCCCCTTGTGTTGTCTACCTGATAACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATATGGAATATCTTTATCAGATCTCCACCTTAACAACAAACTGCAGTCAGGGCTGTTTCCAACCAGTTTCCAGCGGTTCGATCAACATTCTAGAATCACTAATGGCATCATAACTGCCCACAGAAAGAACAATGAAAGTATATCTTGTTTGCTTACAATGGGGAATTCTAGCCAGAATCTGGAAAAATCTGCTAATGAAAAGACACCACAGTTCCTACTCTTTGGTCAGCCAATACTAACCGAGCAACAGATGTCTCGTACCTGCTCCAGTGATGCAGTCTCACAAGTTCTTACTGGCAAAAGTTCATCAGATGGGAGTTCAGATAAGGCAAAAAAAATTTCTGATGGCTTGGGATCTACACTTGAACAGAAAGGTAAGCCAGAAAATTTATCCAATGTTGGATTTTCATGGCACCAGGGTTTTCAGACAACTGAAATTGGCCTGGATACGGGTCACTGCAAGGTATTCATGGAGTCAGAGGATGTGGGACGGTCTCTTGACCTCTCGGTTCTTGGATCTTACGAAGAGCTATACACAAGGCTTGCCAACATGTTTGGAATAGAAAGATCAGAGACATTCAGCCATGTCCTTTACCGAGACGCCACAGGAGCAGTTAAACACACTGGAGATGAACCATTCAGTGATTTTACGAAAAAAGCAAAAAGACTGACAATTCTAATGGATTCTGGCAGCAATAACATTGGAAGGACATGGATTACAGGTATGCGGAATGCCGAAAATGGACTAGATTCTTCAAACAAGACAGGTCCTTTAAGCATATTTGCCTAG 2136 0.4794 MKETEKSLDSQLWHACAGGMVQMPLVSSKVFYFPQGHAEHAHTNVDFAAAPRIPALVLCRVAAVKFMADPETDEVYAKIRLVPIANNELDCEDDGVMGSSGSEAPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIAGGPESPSGWNPASPYAGFPKFLREDESKLMRNGVGGNSNPGSGGGLRGGRRVRPESVVEAATLAANGQPFEVVYYPRASTPEFCVKASGVRSAVRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPIIHLSPFSPPRKKLRIPQHPDFPFDGQFPMSSFSSNPLGSSSPLCCLPDNTPAGIQGARHAQYGISLSDLHLNNKLQSGLFPTSFQRFDQHSRITNGIITAHRKNNESISCLLTMGNSSQNLEKSANEKTPQFLLFGQPILTEQQMSRTCSSDAVSQVLTGKSSSDGSSDKAKKISDGLGSTLEQKGKPENLSNVGFSWHQGFQTTEIGLDTGHCKVFMESEDVGRSLDLSVLGSYEELYTRLANMFGIERSETFSHVLYRDATGAVKHTGDEPFSDFTKKAKRLTILMDSGSNNIGRTWITGMRNAENGLDSSNKTGPLSIFA* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0290 711 FunFam Auxin response factor 109 213 - -
Vvi6g0290 711 MobiDBLite consensus disorder prediction 248 268 - -
Vvi6g0290 711 Gene3D - 598 683 - -
Vvi6g0290 711 ProSiteProfiles PB1 domain profile. 599 679 IPR000270 GO:0005515
Vvi6g0290 711 Gene3D - 109 213 IPR015300 -
Vvi6g0290 711 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi6g0290 711 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Vvi6g0290 711 Gene3D - 315 387 - -
Vvi6g0290 711 MobiDBLite consensus disorder prediction 547 574 - -
Vvi6g0290 711 SMART B3_2 111 213 IPR003340 GO:0003677
Vvi6g0290 711 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Vvi6g0290 711 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Vvi6g0290 711 CDD B3_DNA 110 211 IPR003340 GO:0003677
Vvi6g0290 711 FunFam Auxin response factor 315 388 - -
Vvi6g0290 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0290 Vvi-Chr6 3443778 3447763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0290 4 683 B3 DNA Binding Superfamily AT4G30080 59.366 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi6g0290 B3 2.8e-21 CL0405