Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0289 ATGATTGACTCTGGGCTTTTTGATGAGAATGGCAATGGCAATGACCATAGCTCAGATGATATGTTTGATGGCATCATTGATATTTTTGATTTCCCCATGGAAGATGTGGACATTGGTGGAGAGGTAGAGGAGCTGCAACGTGAATCATCACCTTTGAATGATTTATTGGCCCTTCCCTGTCCTTTCTCGGGCAATTCTTGCAATGACACTTCAAACCTTCGAACAATTCCATCTGATGAAGCTCCTCGGACAGAGCCAATCGTCATAGATACTTGTAGTGGAAATATTTCCCTCCATGGGGATTCTTCTGATGACAAAGAATCACTGCTGCTGCAAAACTCTACAACCTCTGAATCCGGAAAATCTGCCTCTGAACCATTTGCCCAAACCATTGAAGCTTCAGAAGGCTATCCCAACTTCATGAAAGGAAAGCAGAAGAAGAAAAAGAGAAAGAAGCTATCACTGCTATCAGGCGCTATGGGGGTAAAGAAACAGTGGTGGCAGCAGCCGATTACAATTGGGAGATGCATGCACTGTAATGTAACAAGGACCCCACAATGGAGGGAAGGACCAAATGGGCCCAAGACTCTTTGCAATGCATGTGGAGTTTGCTACAAGCGTGGCAGCCTCTTTCCAGAGTACCGTCCTGCATCCAGCCCTACTTTTGTTCCATCTTTGCACACAAACTCCCGCAGAAAAGTTACCGAGATGAGACACAAAGCTGGTCAAGAGGCTGCTGTTGGAGCAAGTCCAACCTTTCTTACTACACCTCTGCACACCAACTCCCGCGACAAGGTTATAAAGATGAGCAACAAAGCCGGTCAGGCTGGGGACTCTTGCAGTGAGGTTGTGGAGATAAGAAACAAAGGCATCCAGGTGGGGGCTACCTTCCTTGCAACTTCAGATTCAAAGCCCGATGAGAAAGTTACTGAAGCTGACATGGAGGCTTCTACGGCAGTTAGTCCCATCCCTGTTGCAACTTTGCCCTCACCCCACAGGAAGGTGATTAAGATGAGAAGTAATGGTGGGCAGGAGGCTGCTATGGCCACAACTCCTACCTTTGTTGCATCATTACACTCAAACTCCCACAAAAAATGTTCCTTCCAGCAGCCAGTTACTGTTAGAAAATGCATGCATTGTGAGGCAGCACAGACCCCTTTATGGAGGCAAGGACCATGGGGACCCAAGAGCCTCTGCAACGCATGTGGGATTCGATACAAGTCTGGCCGTCTCTTCCCAGAGTACCATCCTGCTGCCAGTCCTACCTTTGTTGCATCTTTGCACTCAAACTCCCACAAGAAAGTCTTAGAGATGAGAAACCAGGCTACCCAACAACAGCTTTCTTTGGCTGCAACAGATACGGCAATGTCCCACCCCTCACAACTCATTCCATGA 1395 0.476 MIDSGLFDENGNGNDHSSDDMFDGIIDIFDFPMEDVDIGGEVEELQRESSPLNDLLALPCPFSGNSCNDTSNLRTIPSDEAPRTEPIVIDTCSGNISLHGDSSDDKESLLLQNSTTSESGKSASEPFAQTIEASEGYPNFMKGKQKKKKRKKLSLLSGAMGVKKQWWQQPITIGRCMHCNVTRTPQWREGPNGPKTLCNACGVCYKRGSLFPEYRPASSPTFVPSLHTNSRRKVTEMRHKAGQEAAVGASPTFLTTPLHTNSRDKVIKMSNKAGQAGDSCSEVVEIRNKGIQVGATFLATSDSKPDEKVTEADMEASTAVSPIPVATLPSPHRKVIKMRSNGGQEAAMATTPTFVASLHSNSHKKCSFQQPVTVRKCMHCEAAQTPLWRQGPWGPKSLCNACGIRYKSGRLFPEYHPAASPTFVASLHSNSHKKVLEMRNQATQQQLSLAATDTAMSHPSQLIP* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0289 464 Gene3D - 172 242 IPR013088 GO:0006355|GO:0008270
Vvi6g0289 464 ProSiteProfiles GATA-type zinc finger domain profile. 375 407 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 375 434 - -
Vvi6g0289 464 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 PANTHER GATA TRANSCRIPTION FACTOR 366 449 - -
Vvi6g0289 464 FunFam GATA transcription factor 172 220 - -
Vvi6g0289 464 CDD ZnF_GATA 376 423 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 FunFam GATA transcription factor 14 371 445 - -
Vvi6g0289 464 Gene3D - 373 448 IPR013088 GO:0006355|GO:0008270
Vvi6g0289 464 Pfam GATA zinc finger 377 410 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 Pfam GATA zinc finger 176 207 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 ProSitePatterns GATA-type zinc finger domain. 377 402 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 233 - -
Vvi6g0289 464 ProSiteProfiles GATA-type zinc finger domain profile. 175 206 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 SMART GATA_3 170 220 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 SMART GATA_3 371 421 IPR000679 GO:0006355|GO:0043565
Vvi6g0289 464 CDD ZnF_GATA 175 222 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0289 Vvi-Chr6 3428913 3432090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0289 374 441 C2C2-Gata Transcription Factor Family AT3G54810 77.941 3.52e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi6g0289 GATA 2.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0289 - K09184 vvi:104879571 919.457