Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0282 ATGGCTTATGAGAATTCGAGATCTGTAAAATTTCAAGATGATCTTGAACTAGCAAAATTTCCAGCAACCAATGGGGATGGGAAGATCAAGATGAAGTACAAGATCGATGGAACACAAATACAGGAGGCAAGTTACAAGAAGGCTGGGAAGGAGGTGTCTGGGAAGTCTGGAAGATCATTGAAAGCTAAAGTACTGTCCAGAGTTTTTTCTGAGGACTATGAGAGGGTGAAGCAAAAAATATTGGATCCTCGAGGAAAATCCATTCGCAGATGGAACAAGATTTTCTTAGTAGCATGCTTGATTTCCCTGTTTGTGGACCCTTTATTCTTTTACTTGCCGGATGTTCGGGATAAAGTGTGCATGGACATTGAAATACCCCTGGAAGTTGTGCTTACAATTATCAGATCAATAGCTGATATCTTTTACATGATTCAGATTTTTGTTCGATTTCGTACAGCTTATGTTGCACCTTCCTCCCGAGTATTTGGGCGAGGAGAGCTTGTTATAGATACTTCAAAGATTGCATTAAGGTACCTAGGCAAGGGCTTCTGGATTGACCTCATTGCTGCTCTGCCCCTTCCTCAGGTTCTAATTTGGATAATCATCCCCAATTTAAGGGGCTCCACAATGACAAACACAAAAAATATGCTACGATTCATCCTCATCTGTCAGTACCTCCCCAGACTTTATCTTATATTTCCACTCTCATGTCAGATAGTTAAGGCCACAGGAGTTGTGACAGAAACAGCTTGGGCTGGGGCTGCTTATAACCTGATCCTCTATATGTTGGCAAGCCATGTTTTAGGAGCTTGCTGGTATCTTCTCTCGATTGAGCGACAAGAGGCCTGCTGGAGAACTGTCTGCAATCTTGAGAAGTCATCCTGTCAGGATGGATATTTTGATTGCCACAAGGTTAAGGACCCTGGTAGGGAGGCTTGGTTCAAGTCGAGCAATGTCACAAAACTGTGTGATCCAAATAATACCTTTTATCAGTTCGGCATATATGCTGATTCTGTGATATCAGAGGTTACATCCTCAGCATTCTTCGAGAAATACTTTTACTGCCTGTGGTGGGGCCTGAGGAACCTCAGTTCTTTGGGACAAAATCTTTCCACAAGCACCTATGTTGGAGAAATTATTTTTGCCATCATAATTGCTACTCTTGGATTGGTTCTCTTTGCGTTGCTCATTGGTAATATGCAAACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGAAGCAGTCTGTTAGGAAATATGATCAATATAAATGGGTGGCCACTCGAGGAGTCGATGAAGAAGCTCTTCTAAAAGGACTTCCTATGGACCTCCGAAGAGACATCAAGCGTCACTTGTGCTTTGATCTAGTTCGACGAGTTCCTTTGTTCGATCAAATGGACGAACGAATGCTAGATGCGATATGCGAGAGGCTTAAACCCGCATTGAGCACTGAAGGCACATTTCTAGTGCGTGAAGGTGATCCTGTGAATGAGATGCTCTTCGTAATCCGAGGCAACCTTGATTCTTACACTACCAATGGTGGTCGAACCGGATTCTTCAATTCATGCCGCATAGGCCCAGGTGACTTCTGTGGTGAGGAGCTGCTTACATGGGCCCTGGAACCTCGTCCAAGCATCATCCTCCCATCATCCACACGCACGGTGAAATCCATTTCTGAAGTAGAGGCCTTTGCTCTTATAGCAGAAGACTTGAAGTTTGTAGCATCGCAATTTCGAAGACTTCATAGCAAACAGCTCAGACACAAGTTCCGGTTCTACTCGCCCCATTGGAGAACATGGGCTGCATGTTTCATACAAGCAGCATGGCGCCGGTTTAAGAGGCGGAAGGAAGCAGCTGAGCTCAAGGCTAGGGAGCACCCTGTGGCTGCTGAGCCCCAACCATCATTTGACCGCTTTGATGTGGTCATGCCTGCACCCGGTTCAGGCCTTGCTGTGTATGCGGCAAGGCTAGCTGCAAGCGCTAGGAGGGGTCCCCTCAAGCATTCTGGATCGGATTCCAGTGTTGTGAGCTCATTGCAAAAGCCAGCTGAACCTGATTTTTCTGTGGATGAAGAATGA 2142 0.4533 MAYENSRSVKFQDDLELAKFPATNGDGKIKMKYKIDGTQIQEASYKKAGKEVSGKSGRSLKAKVLSRVFSEDYERVKQKILDPRGKSIRRWNKIFLVACLISLFVDPLFFYLPDVRDKVCMDIEIPLEVVLTIIRSIADIFYMIQIFVRFRTAYVAPSSRVFGRGELVIDTSKIALRYLGKGFWIDLIAALPLPQVLIWIIIPNLRGSTMTNTKNMLRFILICQYLPRLYLIFPLSCQIVKATGVVTETAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTVCNLEKSSCQDGYFDCHKVKDPGREAWFKSSNVTKLCDPNNTFYQFGIYADSVISEVTSSAFFEKYFYCLWWGLRNLSSLGQNLSTSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIKRTDTEQWMHHRQLPAELKQSVRKYDQYKWVATRGVDEEALLKGLPMDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFVIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALEPRPSIILPSSTRTVKSISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSPHWRTWAACFIQAAWRRFKRRKEAAELKAREHPVAAEPQPSFDRFDVVMPAPGSGLAVYAARLAASARRGPLKHSGSDSSVVSSLQKPAEPDFSVDEE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g0282 713 CDD CAP_ED 483 614 IPR000595 -
Vvi6g0282 713 MobiDBLite consensus disorder prediction 685 713 - -
Vvi6g0282 713 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Vvi6g0282 713 Gene3D Helix hairpin bin 410 474 - -
Vvi6g0282 713 SUPERFAMILY Voltage-gated potassium channels 82 405 - -
Vvi6g0282 713 SUPERFAMILY cAMP-binding domain-like 413 609 IPR018490 -
Vvi6g0282 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 708 - -
Vvi6g0282 713 Pfam Ion transport protein 91 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi6g0282 713 Gene3D - 91 407 - -
Vvi6g0282 713 ProSiteProfiles cAMP/cGMP binding motif profile. 483 568 IPR000595 -
Vvi6g0282 713 Gene3D Jelly Rolls 481 601 IPR014710 -
Vvi6g0282 713 SMART cnmp_10 483 614 IPR000595 -
Vvi6g0282 713 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0282 Vvi-Chr6 3298159 3301615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0282 57 711 Ion Channels AT2G28260 75.725 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0282 K05391 - vvi:100241591 1424.07