Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0279 ATGAAGCTCCCAGTGGAAGTTGCTCTTGCTTGTCTCATTAGCTTACTTGGGATTCAGCTTAGTCTTTGTGATGTACTTTCTGATACATCCAACATAAATAAATGGACATGCACATGTTCTTCTGCTAATCAGGGCAGCCAGAATTATATTCTTGCAGGGAACTGTTCTACATCATGTGATTGCAGTCCAGCTGGAGGAGGATCAACTGGAGATAGATGGACATGTATCTGTGCTGCTGATGGATTTCCTAAAGTAGCATCAGACAGTGGTCATACCAGCTGCTTTACAGCCTGCAATTGTACTTCTGGATCTCCCAATGAAGATGCACCTGCTCGAAGGAAGCATATTTCCAGTAAAGTTGTTGTGATCATTCTGTTACTATGTGTTGTACTCACAACTTTTGCATTTCTTGCTTCGGTGTTATGTTATGTCTATCGAAAGGAAAAGTGCCCTATCCAACCACCAGTATTCTCATCAGACAAAGAAACAAGTTGCAATAGTGCTACCAACTTAATAAGCCATAAAATTAATTCAGTGCCAGAATCCAGAGTTGATATTGGGTCCCCTATCAATTCTTTAACAGGGTGCTTTCACAAGGCTTCTTCCTTATTTAGGAGCAAAACAGGAACCATACACGAGACAATTGTCCAATTTTCTTACTATGAATTGGAAAATGCTACCAATAAGTTCTCCAATTCTAATTTAATAGGAGTTGGTGGAAGCAGCTATGTTTATTGTGGTCAGCTCAAGGATGGAAAAACTGTGGCAGTTAAGCGACTGAAAACCAAAGGGGGCCCAGATGCTGACCTTGTTTTCCTAACAGAGATTGAACTCTTATCCAGACTTCATCATTGTCATGTGGTGCCTTTGCTTGGCTACTGCTCAGAATCCCAAGGAAAGCATGCTCAGAGATTGTTAGTGTTTGAGTACATGCTCAATGGTAATCTGAGAGATTGTTTGGATGGGGACTCAGGAAAAAACATGGACTGGGCCACTCGTGTTTCGATTGCTCTCGGAGCAGCCAGAGGCTTAGAATATCTTCATGAAGCAGCTGCTCCAAGAATTTTGCATAGAGACGTTAAATCCACAAACATTCTTCTGGATGAGAATTGGAGAGCCAAAATAACTGATCTTGGTATGGCTAAACGCTTGAGAGCTGATGGCCTTCCTAGCTGTTCCAATTCTCCAGCAAGAATGCAGGGCACCTTTGGCTATTTTGCACCGGAATATGCTATTGTGGGGAGAGCCTCCCCTATGTCAGATGTTTTTAGTTTTGGGGTGGTTCTTCTTGAGCTGATCAGTGGGCGGAAACCCATCCACAAATCTACCAACAAAGGAGAAGAAAGCCTTGTCATATGGGCTACCCCTCGGCTACAGGATAGTGGGCGAGTGATGTCAGAGTTACCTGACCCACATTTAAAAGGGAATTTCCCAGAAGAAGAAATGCAGATAATGGCTTTCTTAGCAAAGGAGTGCCTATTGTTGGATCCTGATGCCCGACCAACCATGAGTGAGATTGTTCAAATCCTTTCAACGATTGCACCAGATAAATCTAGGAGGAGAAATATTCCAGTCAATTTTTTTCAGAGGTTGAGCCCTCATAGCATGAAAAGTGAAGCACACATGTTGATACCTGACAAAAAATCTGAGAGTCCTGTTGATGTGGAGCTCAGGCGAGCGGGGACCAATAAATGGACAGATCGTTGTTCATTACCATTGGATATTGACCGCACTCTCTGTATTGGAGACAGTCAGACTAAAGCAGTCAGTGTTTCTGCTGAGTATATAGAGAGATTGATCATCATGACTTCAAATGCTAGGAGTTGGCGTGGTCCAGCTGATGAAACTGTGGACTTAACAGAACCCCGGTTTGAATCCTTCTGCATGGCAAATGGTAGATCACCTTGA 1908 0.4303 MKLPVEVALACLISLLGIQLSLCDVLSDTSNINKWTCTCSSANQGSQNYILAGNCSTSCDCSPAGGGSTGDRWTCICAADGFPKVASDSGHTSCFTACNCTSGSPNEDAPARRKHISSKVVVIILLLCVVLTTFAFLASVLCYVYRKEKCPIQPPVFSSDKETSCNSATNLISHKINSVPESRVDIGSPINSLTGCFHKASSLFRSKTGTIHETIVQFSYYELENATNKFSNSNLIGVGGSSYVYCGQLKDGKTVAVKRLKTKGGPDADLVFLTEIELLSRLHHCHVVPLLGYCSESQGKHAQRLLVFEYMLNGNLRDCLDGDSGKNMDWATRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDENWRAKITDLGMAKRLRADGLPSCSNSPARMQGTFGYFAPEYAIVGRASPMSDVFSFGVVLLELISGRKPIHKSTNKGEESLVIWATPRLQDSGRVMSELPDPHLKGNFPEEEMQIMAFLAKECLLLDPDARPTMSEIVQILSTIAPDKSRRRNIPVNFFQRLSPHSMKSEAHMLIPDKKSESPVDVELRRAGTNKWTDRCSLPLDIDRTLCIGDSQTKAVSVSAEYIERLIIMTSNARSWRGPADETVDLTEPRFESFCMANGRSP* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0279 635 Gene3D Phosphorylase Kinase; domain 1 203 310 - -
Vvi6g0279 635 SUPERFAMILY Protein kinase-like (PK-like) 212 510 IPR011009 -
Vvi6g0279 635 SMART serkin_6 230 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0279 635 PANTHER OS01G0750732 PROTEIN 106 518 - -
Vvi6g0279 635 Pfam Protein kinase domain 232 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0279 635 Gene3D Transferase(Phosphotransferase) domain 1 311 529 - -
Vvi6g0279 635 FunFam receptor-like serine/threonine-protein kinase NCRK 204 310 - -
Vvi6g0279 635 ProSiteProfiles Protein kinase domain profile. 230 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0279 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Vvi6g0279 635 FunFam receptor-like serine/threonine-protein kinase NCRK 311 522 - -
Vvi6g0279 635 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Vvi6g0279 635 CDD STKc_IRAK 236 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0279 Vvi-Chr6 3269899 3275141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0279 1 631 Receptor kinase-like Gene Family AT2G28250 55.818 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vvi6g0279 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0279 - - vvi:100263865 1266.91