Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0277 ATGGAATTCTCACACCACAACGGCAACGGAAACGGAAAGGTGGACGCCAATGGCTTCTGCATGAAGGCCGCGGATCCCCTCTACTGGGCGGCGGCGGCGGAGACTCTGAAGGGGAGCCATTTGGAGGAGGTGAAGAGAATGGTGGCGGACTTCAGAAAACCGGTGGTGAGGCTTGGGGGTGAGAGCCTCAACATCGCACAGGTGGCGGCGGTGGCGGCCACCGGAAGCGACGGGGTGACAGTGGAACTGTCGGAGTCGGCGAGGGCCGGGGTGCAGGCCAGCAGCAACTGGGTGATGGAGAGCATGAACCAAGGGACCGACAGTTATGGGGTGACTACCGGGTTCGGTGCGACTTCCCATAGAAGAACCAAACAAGGAAATGCTCTTCAGAAAGAACTGATCAGATTCTTGAACGCTGGAATATTTGGGAAGGGAACAGAGTCATGCCACACATTGCCTCACAGTGCGACAAGAGCAGCAATGCTGGTGAGGATCAATACCCTCCTCCAAGGATACTCAGGCATCAGATTTGAGATCTTGGAAGCCACCGTTAAGCTCCTCAACGCCAACATTAGTCCTTGCTTGCCTCTGCGTGGCACCATCAGTGCCTCTGGTGATCTCGTCCCTCTTTCTTACATTGCCGGTCTCCTCACCGGCAGGCCTAACTCCAGGGCCGTAGGGCCTAACGGAGAGTCCCTCAATGCTGAGGAAGCCTTTCGCCTTGCCGGAATTGATGGAGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCACTCGTTAATGGCACGGCAGTAGGGTCTGGTTTGGCTTCAACAGTTCTCTTTGAGGCTAACATACTTGCTGTTTTATCAGAAGTTTTGTCGGCTATATTTGCTGAGGTTATGCAGGGGAAGCCAGAGTTTACTGATCATTTGACGCACAAATTGAAACACCATCCGGGACAAATTGAAGCTGCGGCTATTATGGAACACATTTTGGATGGAAGCGCTTATGTTAAAGCGGCTCAGATGCTGCACGAGATCGATCCCCTCCAGAAGCCCAAGCAAGATCGGTATGCTCTTAGGACTTCACCCCAGTGGTTGGGTCCTCAGATTGAAGTTATTCGAACATCAACGAAGTCCATAGAACGAGAGATCAATTCGGTGAATGACAACCCATTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGGAACTTCCAGGGTACCCCAATTGGTGTTTCCATGGACAACACCAGATTAGCAATAGCCTCCATTGGGAAGCTCATGTTTGCGCAATTCTCTGAGCTGGTTAACGATTTTTACAACAATGGGTTGCCCTCAAATCTCTCTGGTGGAAGGAATCCAAGTCTGGATTATGGGTTCAAGGGTGCTGAGATAGCAATGGCAGCATATTGTTCTGAGCTCCAATTCCTAGCCAACCCAGTCACCAATCATGTTCAGAGCGCTGAGCAACACAACCAGGATGTGAACTCCTTAGGATTGATCTCTTCGCGAAAAACGGAAGAAGCAATTGACATCTTAAAGCTCATGTCCTCAACCTACCTGGTGGCACTTTGCCAGGCTATTGATTTGAGGCATTTGGAGGAGAACTTGAAGAACACAGTCAAGAACACAGTGAGCCAAGTGGCCAAAAAGGTGCTAACCATTGGGATCAATGGGGAGCTTCACCCGTCTAGATTCTGCGAGAAGGACTTGCTTAAAGTAGTAGACCGCGAGCACGTTTTTGCCTACATCGATGACCCATGCAGTGCAACATACCCCTTGATGCAAAACCTAAGGCAAGTCCTGGTTGATCATGCGCTGATGAACAACGAGGATTTGAGGAATTCAAGTACTTCAATCTTTCTCAAGATTGGGGCATTTGAGGAAGAACTGAAGACCCTTTTGCCTAAAGACGTGGAGAGCACGAGAATTGCCTTTGATAATGGGAATCTGGCCATTCCAAACCGCATCAAGGAGTGCAGGTCCTACCCTCTGTACAAGTTTGTGAGGGAAGAGTCAGGGACTGAGTTTCTGACAGGAGAAAAGGTTACCTCGCCAGGGGAGGAGTTTGATAAGGTGTTCTCTGCAATATGTGAGGGGAAGATCATCGATCCGCTGCTCAAATGTCTCAATGATTGGGATGGGACTCCTCTTCCAATTTGCTGA 2154 0.5028 MEFSHHNGNGNGKVDANGFCMKAADPLYWAAAAETLKGSHLEEVKRMVADFRKPVVRLGGESLNIAQVAAVAATGSDGVTVELSESARAGVQASSNWVMESMNQGTDSYGVTTGFGATSHRRTKQGNALQKELIRFLNAGIFGKGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEATVKLLNANISPCLPLRGTISASGDLVPLSYIAGLLTGRPNSRAVGPNGESLNAEEAFRLAGIDGGFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQMLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRTSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTYLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTIGINGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQNLRQVLVDHALMNNEDLRNSSTSIFLKIGAFEEELKTLLPKDVESTRIAFDNGNLAIPNRIKECRSYPLYKFVREESGTEFLTGEKVTSPGEEFDKVFSAICEGKIIDPLLKCLNDWDGTPLPIC* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0277 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Vvi6g0277 717 NCBIfam phenylalanine ammonia-lyase 25 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi6g0277 717 CDD PAL-HAL 61 527 IPR001106 -
Vvi6g0277 717 Gene3D - 16 263 IPR024083 -
Vvi6g0277 717 PANTHER HISTIDINE AMMONIA-LYASE 18 717 IPR001106 -
Vvi6g0277 717 Pfam Aromatic amino acid lyase 63 540 IPR001106 -
Vvi6g0277 717 Gene3D - 530 651 IPR023144 -
Vvi6g0277 717 FunFam Phenylalanine ammonia-lyase 264 560 - -
Vvi6g0277 717 FunFam Phenylalanine ammonia-lyase 16 263 - -
Vvi6g0277 717 Gene3D Fumarase/aspartase (Central domain) 264 711 - -
Vvi6g0277 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Vvi6g0277 717 SUPERFAMILY L-aspartase-like 25 717 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0277 Vvi-Chr6 3233636 3236852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0277 12 717 Monolignol Biosynthesis Gene Families AT2G37040 82.011 0.0 1233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0277 K10775 - vvi:100241575 1420.22