Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0275 ATGGCAAATGATTCTCGAACAAGTCGCAAAACTAAGGATGATGACATTAATAATTCTAAGGGCAGGAACATTCGTGGCAAAGGATCATCTACTTCGGCATCTGCAACAACAGATATATCTGGTTTAAGAAGGTCAGCTAGAGAAACACCAACAAAGAAACTGTTGAATCCAAGCCCTTCAAGCACACGGAAGTCTGAGCGACTTGAGAAGCAGACACCAGTGACTCCTCCTGTTAAGAGGAAATCTGAGAGAGTTGAGAAGCAGAGGATGCCAAGTCCTTCGAGGAGGTCTGAGAGGGGTAAGAATCACCAGTCACCAAGTTCTTCAGGATCAAAAAAGTCAGAGAAAACTTCTGGTTCATCTGAGATGAGACATAAGAAGCAAAAAAGAGAGAAAAGTGTGAAAGAGGTGACCCTCGAAGCTAGAAAAGTTAGCAAAAATGAGGAACATGATTTGGAATCTGTTCAGGTGAAAAAGAAAAGAATGGATGCACGTGCTTATAGGGCATTGCTCAGGCGCAAGGTTAATGATGCAGATCTTGGTGGGAAGATGAGAAAACCAGATAAGTTGTTTCAAGAAGATAGCAGTGATAGCAGTGATAGTGGTTCCAAGCAAGTTGAGGATGGGAGAACCGAGTGCAGTGGAAGAAGAGAAGATGAATTGAAAGAAAAATCACAGGACAGAGCTCGTGAGAGGCCTGCAGAGGAATCTAATTGTAGTTTAAGAACATTCACAACTGAAGCTTTAGAAAATCATGGCAGAGTAGAATTCTCCTCAAGTCAGAATGGCTGTTTGAAGGGAACATTTGAGCATGAAGAGCGAAATCCTGTAGAGGAAGCTAAAGGTACTACTGATAATGCTGAGAGGATAGAGACGCACTCCTCTCCAGCTGAAAAGCTGCAAATGCCAGAGTTGATAGATTCTACTTCTAATAGAAGATCACTTGATGGTGGTGATGGCTTGAAACTTACACCTGTTAAAAGAAAGAGGAACACATTGGACCTGGATTCTGATGCTTCTGAAAGAGTTCCAAGTAAAGATATCTGCACCCCTATTGCTGATGCTGTTTCTACATCACCAACAGGGTGCACAACAAATAAAGTTGTTGAGACATGTGGAGTATGTTCTAAAAGGCAAAGGTTAGACCATGATTCACCATCCCAGGAGTTCTGCTCTTGCAATACCAAAATAAACCAGGACCTAAATGACAGCTCTGCTCATAAGGATAGAGGGGAACTTGAAGGATGTATGACCACAGGATATGCTGAAAAATGTGAAAGCAAGATAAAGGAGAAGGAGTTTCATTTAGATAGTCAAACTGGCGATGACCATAATACATGTGTTGTCTGCAAACTTGGTGGAAAACTCTTGTGCTGTGATGGAAAGGGATGTAAAAGAAGCTACCACCTTGCTTGTCTGGATCCTCCTTTGGGGGAGATTCCACCCGGAATCTGGCACTGCATGCTCTGTGTCAAAAAGAAGACTGAATTAGGTGTACATGCAGTATCAGAAGGAGTAGAATCAATTTGGGATACAAGGGAAGTGGAGTTGCCTAGTGCTGAAGGAGTGCAAAAGCAGAAGCAGTATTTTGTTAAATACAAGGGCCTTGCTCATGTGCACAATCATTGGATACCAGAATCTCAGCTCCTTCTTGAGGCTCCATCTCTTGTGGCAAAATTCAATCGAAAGAATCAGGTGAAGTATTTTGCACTGTATAAGCTAGAATGGACTGTGCCACATCGTTTGCTACAAAAAAGATTGTTAATGCCCACAAAGCAGAGTGATGGCTATTATACTGGGCGGGCTGGTGATATCCCGGATTGCCTCTATGAGTGGCTTGTGAAATGGCGTGGTCTTGGTTATGAGCATGCTACATGGGAGCTAGAGAATGCTTCATTTCTGAATTCACCTGAAGCTCAGAGCCTTATAAGGGAGTATGAAAATCGTCGCCGAAAAGCAAAGAGTGCTTCTGATCCTTCCATAACAGATAAGGGAAGGAAAGCTTCGTTAGTCAAACTTTCGAAGTTGCCTGGTGCAGGTTCAATTGGAATTGATGATAATCATCTAAGCTGCGTTAACAAACTTCGTGAGAATTGGCACAAGGGGCTGAATGCTATTGTCATTGATGACCATGCTGATGTCTGTCGGCCTTTTCTCATCATTTCAACTTCCAGTGTCCTTCCTCTATGGGAAGCTGAATTCTCTCGTTTGGCATCATCAGTTAATGTTGTAGTTTATAGTGGAAACAAAGATATAAGGAGAAGTATAAGGACAATGGAATTTTATGAGGAAGGGGGTTGCATTATGTTTGAAGTGCTTTTGGCGCCTCCTGAAGTCGTTGTTGAGGATTTAGAAGTGTTAGAATGCCTGGGATGGGAAGCTGTCATAATTGATGAATATAAAGGCATGTTTCCTCATCTGCTTCAAATTAAATTCTGTTTTGTCACATATTTGCTTATGGAATTTTACTGGATTTTGCAGGAGAGTACATTGGAGTTTGTGAATCTGCTGTCATTTCTTGACTCTGGCAATGATGTAAATAGCAGCAATGTTTTGAAAACTGACTACAATGACAGTGTTAGTATATTAAAGGAGAGGTTGTCACAGTTTATTGCATATGATTGCAAGTCAGACTCTTCTAGATTTGTTGAGTATTGGGTTCCTATTCCATTATCTAATGTTCAACTTGAGCAATATTGTGGTACTCTACTTTCAAACACTATATCACTTTGCTCATGTTCAAAGAATGATCCTGTTGGGGCTCTCCGTGATGTTCTTATATCTACTCGAAAGTGCTGTGATCATCCTTACATCGTGGATTTGTCTCTGCAAAGCTTTCTAACTAAAGGTCTTCCAGAGATCGAGTACTTGGATGTTGGAATAAATGCAAGTGGCAAGCTTCAGCTTCTTGACAGAATGATTTCTGAGATAAAAAATCGAGGTTTAAGAGTGCTGATCCTTTTTCAGTCAATTGGTGGTTCTGGAAGGGATTCCATTGGAGATATTTTAGATGATTTTCTACGTCAAAGATTTGGGCAAGATTCTTATGAACGAGTTGATGGAGGTGGAGTCCCATCCAGGAAGCAAGCTGCTCTGAACAAGTTTAACAACAAAGAGAGTGGGAGATTTGTGTTTTTATTAGAAATCCGCGCTTGTCTTTCAAGCATCAAACTTTCATCAGTGGACACTATTATTATATTTGACAGTGACTGGAACCCAGTGAATGATTTAAGAGCCCTAAACAAGATCACTATTGATTCACAGTTTGAAAAAATAAAACTTTTTCGTTTATATTCACCTTTTACTGTGGAAGAAAAAAGTCTAATCCTTGCAAAGCATGATATGGCTCTTGATAGCAATTTACAGAACATAAGCAGGAGTACTAGTCACATGCTACTCATGTGGGGTGCATCGTATCTGTTCAACAAACTGGAAAAGTTTCATGGCAGTGATGCTCCAGACTCCAGAACGGACACTTCCTCTGAGCAATCACTTTTAAAAGGTGTAATGCAGGAGTTGTTGATCCTTCTTCCTCATAATGGTGCAAATATTGATTTGAGCAACTCCTCTATCATTATAAAAGTTAAACAGAATGAAATATCTTACTGTAAGAATGTAACATTGCATGGTGAGCTGGAAATTCAGTCAACAGATAAAGTGCCACCTCATGTTTTTTGGACAAAACTATTGGAGGGAAGATATCCTCAGTGGAAATATTCATCTGGGCCATCTCAAAGGAACAGGAAAAGAGTTCAGTATTTTGATGAGTCCTCAAAGAGATCAGAACATGAAAGTGATGAGGTTGTAAAGAAGCGCAGGAAGGTGGATAAAGGAAAATTGGTTACTGGAGACAAGGAAGGTAAATGGCCAACTGCTTGTACGCATGATGCACTTCATGCAAACCGTGCTTCCACCTCTCCTCCTTTGGTTAGTGACATCTCAGAGGCATCATCTGAAATTCACACAATTGAGTTTGAGGGAAGAAGAAAACTGCGTGATGCACAGAAGAGTCTCCATCTTGTTTTGGAGACAGATATATCAAAACTTTGTGATATTCTACAACTTTCAGAGGACGTCAAGGGTATGGTTGGGAGGTTACTTGAATATGTAATGAATAATCATCATGTCAACAGGGAACCAGCATCCATATTACAGGCTTTTCAGATATCTCTGTGCTGGACTGCTGCTTCTTTGATGAACCATGAAATTGATCGCAAGGGATCGCTCATGCTTGCAAAACAGCACTTAGCTTTTACCTGCAAAGAAGAAGAGGGAGTCCTGGGAATTGAACCATACAAAGGTGAAAGTAGAGGCTGA 4317 0.4084 MANDSRTSRKTKDDDINNSKGRNIRGKGSSTSASATTDISGLRRSARETPTKKLLNPSPSSTRKSERLEKQTPVTPPVKRKSERVEKQRMPSPSRRSERGKNHQSPSSSGSKKSEKTSGSSEMRHKKQKREKSVKEVTLEARKVSKNEEHDLESVQVKKKRMDARAYRALLRRKVNDADLGGKMRKPDKLFQEDSSDSSDSGSKQVEDGRTECSGRREDELKEKSQDRARERPAEESNCSLRTFTTEALENHGRVEFSSSQNGCLKGTFEHEERNPVEEAKGTTDNAERIETHSSPAEKLQMPELIDSTSNRRSLDGGDGLKLTPVKRKRNTLDLDSDASERVPSKDICTPIADAVSTSPTGCTTNKVVETCGVCSKRQRLDHDSPSQEFCSCNTKINQDLNDSSAHKDRGELEGCMTTGYAEKCESKIKEKEFHLDSQTGDDHNTCVVCKLGGKLLCCDGKGCKRSYHLACLDPPLGEIPPGIWHCMLCVKKKTELGVHAVSEGVESIWDTREVELPSAEGVQKQKQYFVKYKGLAHVHNHWIPESQLLLEAPSLVAKFNRKNQVKYFALYKLEWTVPHRLLQKRLLMPTKQSDGYYTGRAGDIPDCLYEWLVKWRGLGYEHATWELENASFLNSPEAQSLIREYENRRRKAKSASDPSITDKGRKASLVKLSKLPGAGSIGIDDNHLSCVNKLRENWHKGLNAIVIDDHADVCRPFLIISTSSVLPLWEAEFSRLASSVNVVVYSGNKDIRRSIRTMEFYEEGGCIMFEVLLAPPEVVVEDLEVLECLGWEAVIIDEYKGMFPHLLQIKFCFVTYLLMEFYWILQESTLEFVNLLSFLDSGNDVNSSNVLKTDYNDSVSILKERLSQFIAYDCKSDSSRFVEYWVPIPLSNVQLEQYCGTLLSNTISLCSCSKNDPVGALRDVLISTRKCCDHPYIVDLSLQSFLTKGLPEIEYLDVGINASGKLQLLDRMISEIKNRGLRVLILFQSIGGSGRDSIGDILDDFLRQRFGQDSYERVDGGGVPSRKQAALNKFNNKESGRFVFLLEIRACLSSIKLSSVDTIIIFDSDWNPVNDLRALNKITIDSQFEKIKLFRLYSPFTVEEKSLILAKHDMALDSNLQNISRSTSHMLLMWGASYLFNKLEKFHGSDAPDSRTDTSSEQSLLKGVMQELLILLPHNGANIDLSNSSIIIKVKQNEISYCKNVTLHGELEIQSTDKVPPHVFWTKLLEGRYPQWKYSSGPSQRNRKRVQYFDESSKRSEHESDEVVKKRRKVDKGKLVTGDKEGKWPTACTHDALHANRASTSPPLVSDISEASSEIHTIEFEGRRKLRDAQKSLHLVLETDISKLCDILQLSEDVKGMVGRLLEYVMNNHHVNREPASILQAFQISLCWTAASLMNHEIDRKGSLMLAKQHLAFTCKEEEGVLGIEPYKGESRG* 1439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0275 1438 CDD PHD1_AIRE 447 490 - -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 1249 1273 - -
Vvi6g0275 1438 SUPERFAMILY FYVE/PHD zinc finger 436 496 IPR011011 -
Vvi6g0275 1438 ProSiteProfiles Zinc finger PHD-type profile. 444 493 IPR019787 -
Vvi6g0275 1438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 969 1132 IPR001650 -
Vvi6g0275 1438 SUPERFAMILY Chromo domain-like 572 649 IPR016197 -
Vvi6g0275 1438 Pfam SNF2-related domain 713 938 IPR000330 GO:0005524|GO:0140658
Vvi6g0275 1438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 841 IPR027417 -
Vvi6g0275 1438 CDD SF2_C_SNF 951 1079 - -
Vvi6g0275 1438 Gene3D - 578 656 - -
Vvi6g0275 1438 ProSiteProfiles Chromo and chromo shadow domain profile. 504 572 IPR000953 -
Vvi6g0275 1438 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 40 1420 - -
Vvi6g0275 1438 SMART chromo_7 503 565 IPR000953 -
Vvi6g0275 1438 SMART chromo_7 575 651 IPR000953 -
Vvi6g0275 1438 ProSitePatterns Zinc finger PHD-type signature. 447 490 IPR019786 -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 1 244 - -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 270 296 - -
Vvi6g0275 1438 Gene3D - 882 1118 IPR027417 -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 22 44 - -
Vvi6g0275 1438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 883 1122 IPR027417 -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 63 102 - -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 270 295 - -
Vvi6g0275 1438 SMART PHD_3 446 491 IPR001965 -
Vvi6g0275 1438 Gene3D - 501 568 - -
Vvi6g0275 1438 Gene3D - 687 881 IPR038718 -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 117 237 - -
Vvi6g0275 1438 MobiDBLite consensus disorder prediction 1237 1273 - -
Vvi6g0275 1438 Pfam Chromo (CHRromatin Organisation MOdifier) domain 598 649 IPR023780 -
Vvi6g0275 1438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 499 IPR013083 -
Vvi6g0275 1438 ProSiteProfiles Chromo and chromo shadow domain profile. 582 658 IPR000953 -
Vvi6g0275 1438 SUPERFAMILY Chromo domain-like 463 566 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0275 Vvi-Chr6 3165984 3220364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0275 416 503 PHD Transcription Factor Family AT5G36670 35.870 2.42e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0275 K11643 K11642 vvi:100258707 2659.79