Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0274 ATGAACCCTGATGACCTACTTCACTTGAATAATCTTCCCTCTCCTTCAGAGGTACTCATGCCAGGTAAAGGAGTTCTTATTCCCATCAACTGTTCTTGTTCAGGCCAGTTTTTTGAGGCAAATTTCAGTTACACTGTGCCTAGGACCACAACATTCTCAGATATTGCTTGTGGGGTTTTTGAAGGCTTACTGAAACCACATACACTTGGTGAGGCAAATCCTTCTCAAGTAAATGACCCCAAGGTTGATTCTAAACTCCATGTGCCACTGAAATGTGCTTGTCCTGATAATTTTACTAGTAGCGATGGGGTGAAGTACCTTGTGACATATCCTCTTAGAGAAGGTGATGGAACATTGAAATTGGGTAAAAAATTTGGCATTCCTCCTGATACTATATGGGTAGCCAACCATTTAGTACCTCGCCCCACTGTTTATCCAAACACCTCTCTTTTAGTTCCCTTAAGAACAGTACAAATTATTAATCCCAATGTTACAGATTCTCAACCTCCAACCCCAGGTTTTCTTCCCACAATATCAGTAGAAAACTCAAGGAGGAACACAAAGTCGAAGAATTTGTATATCATAGGATCAGCTGTACTCCTCTGTCTGCTGCTTGTAGCAGTGCTGCTTGCATTCTGTGGATTCTACTTTATGGCCTTGAACAAAGGTAAGGGTGAGAAGCTTCAGTCCTTTACTGCTAGAAGCTCTCCAGTATCCCCTCAAAACTCCACAAATTCATGTTTATCTCCGGATCTTCTTGCTGGAATAAAATATTCTTTGCACAATTACAGCATAGAGGAGCTCAGGGAAGCAACAAGGGAGTTTAGTGAAGATACAAAGATAGATGATTGTGTTTATAAGGGGTTGATGGATAATGTTGAAGTGATGATCAAGCAGATGAGATTTGAAGACCATCTCCATATTATCCATATACATTCAAAAATCCATCACATCAACATAATAGATTTACAAGGCATTTGTCATGGTACTGAAAGTGACTGCTCTTTGTCATACCATGTGTTCGAATTTCCCAGCAATGGCTGCTTAAGAGAATGCTTATCTAATTCGTCTAGTCCTCTTGGGTGGCATCAAAGGACCCAAATTGCTTTTGATATTGCAACCGGGCTTCACTATTTACATTATTATACAGTTCCTTCGCATGTCCACTTGAGCATAAACAGCAGAAGTATATTTGTAACAGCAAACTGGAGAGCAAAACTTGCAAATTTTGGAAGCATCCCTGCAGTTGAACTCTCAAAAGGAAATGGTACTACACTTGGTCTTGGAGGGTGGAACCTTCTCCATCAGTCAGCAGTTTCAGCCAAGGTTGACATTTTTGCATTTGGAGTTGTTCTGCTGGAGCTCATCTCGACCAGGGTGGACACGGATGGGAAAGTGTTGAAAGATTCAATTGGATATTTGGGTGGGGCGGCTTCTGAAGGCGATTGCTTCGAGCTATTAAGGAGTTTCATGGACCCTTGGCTTGAGGAGGACTATCCTCTTGCAGAGGCTCTATGTTTGGCTGTTTTAGCCAAGGCTTGTGTGGAAGATGATCCTCTGCATAGGCCATCAATGGATGATATCATGAAAGTCCTTGCCAGAATGGTATGA 1611 0.4178 MNPDDLLHLNNLPSPSEVLMPGKGVLIPINCSCSGQFFEANFSYTVPRTTTFSDIACGVFEGLLKPHTLGEANPSQVNDPKVDSKLHVPLKCACPDNFTSSDGVKYLVTYPLREGDGTLKLGKKFGIPPDTIWVANHLVPRPTVYPNTSLLVPLRTVQIINPNVTDSQPPTPGFLPTISVENSRRNTKSKNLYIIGSAVLLCLLLVAVLLAFCGFYFMALNKGKGEKLQSFTARSSPVSPQNSTNSCLSPDLLAGIKYSLHNYSIEELREATREFSEDTKIDDCVYKGLMDNVEVMIKQMRFEDHLHIIHIHSKIHHINIIDLQGICHGTESDCSLSYHVFEFPSNGCLRECLSNSSSPLGWHQRTQIAFDIATGLHYLHYYTVPSHVHLSINSRSIFVTANWRAKLANFGSIPAVELSKGNGTTLGLGGWNLLHQSAVSAKVDIFAFGVVLLELISTRVDTDGKVLKDSIGYLGGAASEGDCFELLRSFMDPWLEEDYPLAEALCLAVLAKACVEDDPLHRPSMDDIMKVLARMV* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0274 536 ProSiteProfiles LysM domain profile. 108 152 IPR018392 -
Vvi6g0274 536 Gene3D Phosphorylase Kinase; domain 1 254 339 - -
Vvi6g0274 536 Pfam LysM domain 120 153 IPR018392 -
Vvi6g0274 536 Pfam Protein tyrosine and serine/threonine kinase 293 530 IPR001245 GO:0004672|GO:0006468
Vvi6g0274 536 Gene3D Transferase(Phosphotransferase) domain 1 345 536 - -
Vvi6g0274 536 ProSiteProfiles Protein kinase domain profile. 216 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0274 536 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 535 - -
Vvi6g0274 536 SUPERFAMILY Protein kinase-like (PK-like) 256 532 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0274 Vvi-Chr6 3147481 3149091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0274 1 535 Receptor kinase-like Gene Family AT3G21630 30.458 1.04e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi6g0274 PK_Tyr_Ser-Thr 4.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0274 - - vvi:100248454 1044.65