Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0270 ATGGAGATGAGGAACTTTAGACCTGAATCGCATGTAGCACAGCAAAGCCGGCGTGATAAGCTTAGAGTTCAACATCAAAGTTCAACCCCAGCTCACCATTTGGAGGAGTTCCCTAACAGTTTGGAACAATTATCGGTCCATCCAGAACTAAACCCAGATCTTATTCAAGTTCGGAATGTTAGGAACGGCAATGTGCTTTATGATCCTATTGTGCTCTCCTCGGAAATGCTCAATTTTTCATCGAATTCTCATGTGTTTTTGGGTAGCAAGGATGCAATGGTGGGGCAAGATTCGAATGCAGTCTCTCAGGATGCTTCATTCCCCAATTTGTCTCACCCAATTTCATCTAAAGCAGCTGGTGACCCACAAAACTGTGACAATTGGAAAGGCCTTGGTACACAGCAAAGCTGTGATTGGATTGTGAATTATGCTAATGGAACGGTGGCTAGTGAAAGCAATCAAAACCCTATGTATGTCGGGGAAGTCTTGTCAGCCAGCTCTATGAAGGTAAACAACATTTCTGCATCTTCACTCGATTTGAAGCCTAATTACAGTGGATATCAGGATGTGCAGTCATCGATAACCAATCCATCCAGTGAAATTTCTAGTCAAGATAGCCAGAAGCATTATGGTGAAATCCATTTCAATTCTCCTCAACTCTACCGAAACACGCTCCAAGAGGTTGTTACTTCAGCTGCAGTTGGAACCCAGGGGCTAGAAATGGCATCCTTTGCGCATCAGAACATTAGGGACACTGGCCGTGATTCATGGGAAGATGGTGGGAATGAACTTGTTCTTCTTCCAAACTTTGGAAATCAGTCTAGTGCTCTCCGTCTTGATTCTTCTGTTGCTTGGATGACTAGGCCAGTAGAGGGTTGCCATCAGTGGAGTGGTGGTGATTTGGGTGTTCTTGCAAACAAGAGTCTTGGAGACTTGAGTACCATTGCAAGTGATTCTAACGCACAAGGTCTGTCACTTTCCCTTTCATCACATCCTTCATCCAAAATACAGGTAGCTCAGTTTGGGGAGAGATATGAGTCGAAGGATCTACGTTCTGGAACTGCAGCTTTCAGTTGCCCACAAGATTTGAAAGTTATGAGCTCTGGTTATTTATGTTCGGATTCAAAGCCACCTGTTAGTGGTAAAGGGTATGGAAATTCCCTTCACGACATAGTGGGGACTTCTACTTACACTCATAGGAGTGCTGGCCCTCTTGGGCCATTCACTGGGTATGCAACAATTTTAAAGAGTTCAAAATTTTTGAAGCCAGCACAACAGGTCCTGGATGAATTTTGTAAAGCAGCAAGTCCCAAACTGGTGAAAACATGTGAGGTAACTCGGAGGACATCTGGAGATGTTAGTGTTTCAGTTCCTGATGCGGTTAACACATCTGACACTGAGGTTGGAGCTGCCAAGGGTGGCAATTCAGCTGTCTCGTCCTCCACATTTTATGATTCAAATGAAATTAGTGAAGGGGGAGTTAAGAGCAGCTCCTGTGAATCGTATAGGCCTGACTACCAACAAAAGAAGGCAAAGCTCTTGTTTATGCAGGAGGAGGTTTGCAGAAGGTACAAGCAATATCATCAACAGATGCAAATGGTGGTTTCATCCTTTGAAACTGTAGCAGGCCTCAGTGCTGCGACCCCCTACATTGCCCTGGCTCTGAAAACAGTCTCGAGGCACTTTCGGTTCCTGAAGAATGCCATATCAGACCAGCTTAGGCACATAAGGAAAGCCTTGGGGGAGGATTTGTCATCCCCCAGCACTGGTGCCTGCACTAGTGCAGGGGATGCAAGTTCACCAAGGTTAAAGTTCATGAACCAAAGCTTTCCGAAACACAAACCTGGTGGGGCTAACCTGGGTTTCCTTGAACCCCAACAACACGTCTGGAGGCCCCAACGAGGCCTACCAGAAAGGGCGGTGGCTATTCTTAGAGCTTGGCTGTTTGAGCATTTCCTTCACCCGTATCCAACGGACACAGATAAACATATGCTAGCCACTCAAACCGGTCTCTCTCGAAATCAGGTATCAAACTGGTTCATAAATGCCCGAGTTCGGGTATGGAAGCCCATGGTTGAAGAAGTACACATGCTTGAAACCAAAGGTTTAGCAGAAAGGGATCAAAATTCAGGCAAAAAAGATTGGAAGTCCATTGGTGAAGGTGTCAGCCAACGGGATGGCAATCAACCTTCAAACAAGCCTAGTGTCAATGCAATGTCTGATGAGCAATTGGAATGCAGGGGGATGTGTCCCTCAGCAGGCACCGGAGATGAATTGGGTGCTGAGCAGTGGAATCAAGAGAAGCGATCAAGAGTGGAGTGCCAAATTCCTGGAAGCATGGACGGGTCATTGATGGGTTTTGTTCCGTACCAGCGGAGCGGTGTCGAGATTGGGGGACTTGGAGCAGTGTCACTTACATTGGGTCTCAGGCATAGTGTGGAAACTGCACAGCAACAGCAACATCAACAACAATTACAACAGCAGGAGGATCAACTTAGACGGCAATTTGGAGGTCAGATGATTCATGATTTTGTGGGTTGA 2541 0.4612 MEMRNFRPESHVAQQSRRDKLRVQHQSSTPAHHLEEFPNSLEQLSVHPELNPDLIQVRNVRNGNVLYDPIVLSSEMLNFSSNSHVFLGSKDAMVGQDSNAVSQDASFPNLSHPISSKAAGDPQNCDNWKGLGTQQSCDWIVNYANGTVASESNQNPMYVGEVLSASSMKVNNISASSLDLKPNYSGYQDVQSSITNPSSEISSQDSQKHYGEIHFNSPQLYRNTLQEVVTSAAVGTQGLEMASFAHQNIRDTGRDSWEDGGNELVLLPNFGNQSSALRLDSSVAWMTRPVEGCHQWSGGDLGVLANKSLGDLSTIASDSNAQGLSLSLSSHPSSKIQVAQFGERYESKDLRSGTAAFSCPQDLKVMSSGYLCSDSKPPVSGKGYGNSLHDIVGTSTYTHRSAGPLGPFTGYATILKSSKFLKPAQQVLDEFCKAASPKLVKTCEVTRRTSGDVSVSVPDAVNTSDTEVGAAKGGNSAVSSSTFYDSNEISEGGVKSSSCESYRPDYQQKKAKLLFMQEEVCRRYKQYHQQMQMVVSSFETVAGLSAATPYIALALKTVSRHFRFLKNAISDQLRHIRKALGEDLSSPSTGACTSAGDASSPRLKFMNQSFPKHKPGGANLGFLEPQQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEVHMLETKGLAERDQNSGKKDWKSIGEGVSQRDGNQPSNKPSVNAMSDEQLECRGMCPSAGTGDELGAEQWNQEKRSRVECQIPGSMDGSLMGFVPYQRSGVEIGGLGAVSLTLGLRHSVETAQQQQHQQQLQQQEDQLRRQFGGQMIHDFVG* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0270 846 Gene3D - 633 695 - -
Vvi6g0270 846 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 282 712 - -
Vvi6g0270 846 SMART prehox3 409 571 IPR006563 -
Vvi6g0270 846 Pfam Associated with HOX 414 570 IPR006563 -
Vvi6g0270 846 SUPERFAMILY Homeodomain-like 632 696 IPR009057 -
Vvi6g0270 846 ProSiteProfiles 'Homeobox' domain profile. 627 690 IPR001356 GO:0003677
Vvi6g0270 846 SMART HOX_1 630 694 IPR001356 GO:0003677
Vvi6g0270 846 MobiDBLite consensus disorder prediction 703 720 - -
Vvi6g0270 846 Pfam Homeobox KN domain 647 686 IPR008422 GO:0003677|GO:0006355
Vvi6g0270 846 MobiDBLite consensus disorder prediction 703 737 - -
Vvi6g0270 846 Coils Coil 815 835 - -
Vvi6g0270 846 FunFam BEL1-like homeodomain protein 9 633 695 - -
Vvi6g0270 846 MobiDBLite consensus disorder prediction 1 26 - -
Vvi6g0270 846 CDD homeodomain 630 691 IPR001356 GO:0003677
Vvi6g0270 846 MobiDBLite consensus disorder prediction 1 38 - -
Vvi6g0270 846 MobiDBLite consensus disorder prediction 722 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0270 Vvi-Chr6 3099617 3107315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0270 338 700 Homeobox Transcription Factor Family AT5G02030 44.118 6.84e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi6g0270 POX 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0270 - - vvi:100255350 1672.91