Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0261 ATGAGCAATGCGAATCCCGCTTTGTGTGTTTTTATGATAATTGCAGTTGCATGGAGTATTCCAAAGAGCGTAATTTGCCAAGATGAAAGCGAACTAAGTAATACTCCTGCTGGTGTTAATCTCTTCACCAGTACCATTTTCAACCGATTTTCCAATTTCACAACTGTTTTCAGAGATGAGATTAAAAAGCATTTGAAATTCTGCATCAAGAATGTGGATGCTGATTGGGATTCGGCATTTAATTTCACATCAGACACCACGTTTTTGTCCAATTGCATTCGAAAAACAAAAGGAGATATCATGCAGCGATTATGTACTGCAGCAGAAATAAAGCTCTATTTCAATAGTTTCTATAGTGGCGAGTCCAGGAGCACAAACTACTTGAAGCTTAACAAGAACTGTAATTTGACCTCATGGGTTTCAGGATGTGAGCCAGGATGGGCTTGCAGTGTTGGTCCAAATAAGAAAGTTGACCTAAAAAATGTGCAGGACTTGCCTGATAGAACCACTGACTGCACGACTTGTTGCGAGGGTTTCTTCTGTCCTCATGGCCTTACCTGCATGATTCCTTGCCCATTGGGCTCTTACTGCCCACTTGCAAAACTCAATAAAGCAACTGGTATCTGTGAACCTTACAATTACCAACTACCTCCAGGGCAGCAAAATAGAAGTTGTGGTGGAGCTGATATTTGGGCTGATATTGGGAGTAGTAGCGAGATATTCTGTTCAGCAGGATCTTACTGTCCATCAACTATCAAAAAAATTCCTTGCAGTAGTGGATATTACTGCAGGATTGGCTCTACATCTCAAAAGCGGTGCTTCCGGATGACAACTTGTGATAAAAATTCAGCAAATCAAAATATCACTGCATATGGAGTCTTGCTTTTTGTCGGATTATGTATTATACTTATCTGTGTGTATAACTGTTCTGACCAAGTTCTCACCACTAGAGAAAGAAAACAAGCACAATCCAGGGAAGCTGCAGCAAGAAGTGCAAGAGAAACTGCACAAGCACGGGAAAAATGGAAATCTGCAAAGGATGTGGCTAAGAAGCATGCCATTGGATTGCAAGCACAGTTATCACGTACATTTTCTCGTGTAAAATCTTCCAGGCAACCAGATAAGATGAAAATTTCAGGGCCACTACCTGGAACTGATGCTGCCTTACCACCTATGCCACTAGATACTTCAAGTGCATCTGCAGCATCAGAAGGCAAGAAAAAGGGGAAAAGCAATCTAGCAAAGATGGTGCATGCACTTGAGGAGGACCCTGAGAGTCATGAAGGCTTCAATCTGGAGATTGGGGATAAAAATTTAAAAAAGAATATGCCAAAGGCTAAGCAATTGCATACACACAGCCAAATTTTCAAGTATGCGTATGGCCAAATTGAGAAAGAAAAAGCCCTGCAGGAGCAGCAGATGAACTTGACCTTCTCAGGAGTAGTTTCAATGGCTAATGATATTGAAGTCAGACCCAGGCCTATGATTGAGGTCGCTTTCAAAGATTTAACCCTTACTTTGAAGGGGAAACACAAACATCTGATGAGGTGTGTGACTGGGAAAATTATGCCTGGCCGTGTTTCTGCTGTCATGGGCCCATCTGGAGCTGGAAAAACAACGTTTCTTTCTGCTCTGGCTGGAAAACCAACCGGATGCACCATGACTGGTTCAATTTTAATAAATGGCAAGGTTGAATCAATGCACTCGTACAAGAAAATTATTGGTTTTGTGCCACAAGATGATATTGTGCATGGAAACTTGACAGTTCAGGAGAATCTATGGTTCAGTGCAAGGTGCAGATTATCTGCTGGGCTGCCAAAACAAGAGAAGGTTCTGGTTGTCGAAAGAGTCATAGAATCCTTGGGGCTACAGCCAGTGCGGGATTCCCTGGTTGGCACAGTAGAGAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGAGTAAATGTTGGGTTAGAAATGGTGATGGAACCTTCACTATTGATCTTAGATGAACCCACTTCTGGTTTGGACAGTTCATCTTCTCAGTTACTACTTAGAGCACTTCGTCGGGAAGCTCTTGAAGGAGTAAATGTTTGCATGGTGGTTCACCAACCAAGCTACACCTTGTTCAGGATGTTTGATGATCTGATACTTCTAGCTAAAGGTGGTCTTACAGTGTATCATGGATCAGTGAAAAAAGTAGAAGAGTATTTTGCAGAACTTGGGATCAAGGTTCCTGACCGTGTTAATCCTCCTGACCATTTTATTGATATTCTAGAGGGCATAGTAAAACCAAGCTCAAGCACAGCAGTGGATCAAAAACAACTTCCTGTTAGATGGATGCTCCATAACGGGTACCCAGTACCCCTGGATATGCAACAGGCAGCTGGATTGACAGCATTCACAAATGCTGGAAGCTCAGATGTTGCTCATTCTGAGAAGCAATCTTTTGTTGGAGAAATTTGGCAGGATGTGGTGTCTGATGTCGCCTTGAAGAAGGATTATATACAAAATAACTTTTTCAAGTCAAAGGACTTATCAAACCGAGTAACTGCTGGTGTACTCCAGCAATACAAATACTTCCTTGGAAGGGTTGGTAAGCAACGGCTACGGGAAGCCAGGATACTAGCTGTTGATTATTTGATTTTATTGCTAGCTGGAATCTGCTTAGGAACACTTGCGAAAGTGAGCGATGCAACTTTTGGGGCACTTGGTTATAATTACACCGTCATAGCAGTTTCTCTCCTCTGCAAGATTGGGGCATTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGAGAGAGGGCTTCGGGAATGAGCAGCTTGGCATACTTTCTCTCGAAGGATACAGTTGACCATTTAAATACAATCATCAAGCCTTTGGTTTATCTCTCCATGTTCTATTTCTTCAACAACCCCAGATCTTCCTTCCCTGATAATTACTTTATTTTGCTCTGCCTGGTGTACTGCGTGACTGGTATAGCTTATTTATTTGCCATCGTTTTTGAACCCGGTCCTGCCCAACTGTGGTCAGTTCTTCTTCCAGTTGTTTTGACTCTCATTGCAACCCAACAAAACCAAAGTGGATTTATCAAAAAATTATCTGACCTGTGCTACACCAAGTGGGCTTTGGAGGCATTTGTCATAGCAAATACTAAAAGGTATTCTGGTGTATGGCTGATTACACGGTGCGGATCACTTATGAAGAGTGGCTACGATCTGAACAACTGGGCTCTTTGTTTATCAAATCTCATCATTGCTGGTATAATCAGTCGTGTCTTAGCCTTCTTTCTTATGGTCTTGTTCCATAAAAAGTGA 3300 0.4221 MSNANPALCVFMIIAVAWSIPKSVICQDESELSNTPAGVNLFTSTIFNRFSNFTTVFRDEIKKHLKFCIKNVDADWDSAFNFTSDTTFLSNCIRKTKGDIMQRLCTAAEIKLYFNSFYSGESRSTNYLKLNKNCNLTSWVSGCEPGWACSVGPNKKVDLKNVQDLPDRTTDCTTCCEGFFCPHGLTCMIPCPLGSYCPLAKLNKATGICEPYNYQLPPGQQNRSCGGADIWADIGSSSEIFCSAGSYCPSTIKKIPCSSGYYCRIGSTSQKRCFRMTTCDKNSANQNITAYGVLLFVGLCIILICVYNCSDQVLTTRERKQAQSREAAARSARETAQAREKWKSAKDVAKKHAIGLQAQLSRTFSRVKSSRQPDKMKISGPLPGTDAALPPMPLDTSSASAASEGKKKGKSNLAKMVHALEEDPESHEGFNLEIGDKNLKKNMPKAKQLHTHSQIFKYAYGQIEKEKALQEQQMNLTFSGVVSMANDIEVRPRPMIEVAFKDLTLTLKGKHKHLMRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKPTGCTMTGSILINGKVESMHSYKKIIGFVPQDDIVHGNLTVQENLWFSARCRLSAGLPKQEKVLVVERVIESLGLQPVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNVCMVVHQPSYTLFRMFDDLILLAKGGLTVYHGSVKKVEEYFAELGIKVPDRVNPPDHFIDILEGIVKPSSSTAVDQKQLPVRWMLHNGYPVPLDMQQAAGLTAFTNAGSSDVAHSEKQSFVGEIWQDVVSDVALKKDYIQNNFFKSKDLSNRVTAGVLQQYKYFLGRVGKQRLREARILAVDYLILLLAGICLGTLAKVSDATFGALGYNYTVIAVSLLCKIGALRSFSLDKLHYWRERASGMSSLAYFLSKDTVDHLNTIIKPLVYLSMFYFFNNPRSSFPDNYFILLCLVYCVTGIAYLFAIVFEPGPAQLWSVLLPVVLTLIATQQNQSGFIKKLSDLCYTKWALEAFVIANTKRYSGVWLITRCGSLMKSGYDLNNWALCLSNLIIAGIISRVLAFFLMVLFHKK* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0261 1099 MobiDBLite consensus disorder prediction 325 344 - -
Vvi6g0261 1099 FunFam ABC transporter G family member 24 492 734 - -
Vvi6g0261 1099 Pfam ABC transporter 518 667 IPR003439 GO:0005524
Vvi6g0261 1099 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 740 IPR003439 GO:0005524
Vvi6g0261 1099 ProSitePatterns ABC transporters family signature. 639 653 IPR017871 GO:0005524|GO:0016887
Vvi6g0261 1099 CDD ABCG_EPDR 495 722 - -
Vvi6g0261 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 720 IPR027417 -
Vvi6g0261 1099 Gene3D - 491 741 IPR027417 -
Vvi6g0261 1099 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 244 1086 - -
Vvi6g0261 1099 MobiDBLite consensus disorder prediction 364 410 - -
Vvi6g0261 1099 Pfam ABC-2 type transporter 696 1099 IPR043926 GO:0140359
Vvi6g0261 1099 SMART AAA_5 524 716 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0261 Vvi-Chr6 2981734 2995237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0261 525 718 Calmodulin-binding Proteins AT2G36910 28.431 8.99e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0261 - - vvi:100853718 2150.17