Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0259 ATGGAATCTTCTTCGAAGTCATCGCCTTCTAAGCGCCGCCGATCTGTATCAGTCAGGCGTCCTGTCAAGGACCGCCATAAGAAAGTGGAGGGCAGAGGCCGACGGGTTAGGGTTCCGGCCATCTGCGCTGCTAGGATTTTTCAGCTCACCAGGGAACTTAAACTTCGTACAGACGGCCAAACCATTGCCTGGCTTCTCTCCCACGTGACTTCTGCTGCCGTGGAAGCCCATATTGCCCGCTCCAAAGAGGCCACTGTTGCTCCTCATGGGACCACCGCAGGTGCCGCTGTAAATGGTGTTTCTGCAGTCCCTGCCGTTCCTGTTGTCCCTCCAGTTCCTGCCGCTGTGATTGACCCTGTCCCTTTGATGGCTCCGCCGGCTGGATTGGGACAGGTGTCGAGTTCCTGTAATGCGATCCCCGCATCAGGGACTATCGGCCTGGAGTGCCTGGGAGGGTTTATGGCGGGGGTCATGGCGGATGATGGATGTGAACTTGAGCTGTTTCCGAGGGCATATGTGAACATGCCGTTCACTTCTCTGTTGATGGAATCCTCCAGGGTTGAGGATAATGATTTCTTCTTTTAG 585 0.5538 MESSSKSSPSKRRRSVSVRRPVKDRHKKVEGRGRRVRVPAICAARIFQLTRELKLRTDGQTIAWLLSHVTSAAVEAHIARSKEATVAPHGTTAGAAVNGVSAVPAVPVVPPVPAAVIDPVPLMAPPAGLGQVSSSCNAIPASGTIGLECLGGFMAGVMADDGCELELFPRAYVNMPFTSLLMESSRVEDNDFFF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0259 194 MobiDBLite consensus disorder prediction 12 32 - -
Vvi6g0259 194 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Vvi6g0259 194 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 79 IPR005333 GO:0003700
Vvi6g0259 194 MobiDBLite consensus disorder prediction 1 32 - -
Vvi6g0259 194 Pfam TCP family transcription factor 23 81 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0259 Vvi-Chr6 2932849 2933433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0259 19 76 TCP Transcription Factor Family AT1G35560 63.793 1.88e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi6g0259 TCP 9.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0259 - - vvi:104879624 312.383