Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0248 ATGAATCTTTCAGAACTTAGTGAGGATGCAAGTCTACAAACAGTAGAGGGAAAAGCAGAAGTGCAGAATAGTAGTAGCGAAGGTGGAGAGCTTTTTTATCTTAATTCTTTACCACCAGGATACAGATTTTATCCCACAGATGCAGAGATTATAGTTTTCTACTTGAGGAAGAAGATTGATCATCAGTCATTGCCACCGAACAAGATAATAGAAGTCAATCTTTATGGTTATGATCCTGATGAACTTGCAGTGAGATACGAGCCATCCGGGAATGATGAATGGTTCTATTTCACTCCAAGGGAAAGGAAATATCGGAATGGGCAACGTCCCAATAGGTCAATTGGAGAAGGATACTGGAAGGCCACCGGAGCTGAAAAAGAGATCAAATTTGAGGATCGAACGGTGGGGTATCGGAAAGCTTTAGTCTTCTACCGAGGAAGCCCTCAAAACGGAGTCAAAACCAACTGGATCATGCATGAATTCACAGTTGCTAAACCTACAGGGCCTCCAAGAAGAAGTGGTGCCAATGATATGAGGTTGGATGACTGTGTTCTGTGCAGAGTCTGTAGGACAGACGAAAGGATCTACAAAAGATCACGGCATGCGTCTAGGCTTGATGAATCAGGCTCATCAAGCTCTAAGATTCCGAGACTTGACCTTAACCCTAATCCTAATGAGGTCAATAATCCATATGAGGAGCAGTACTATTATAATAGCATCCAGATGCCTCTCCAAGCCCAACAGCAACAACCTAGAACTGAAATATTCCAAGCCCCACAAGAACCAGATCATTTTGCTCTGCAAAGCACCCAATACCCCATCCTGGACCCTAGTGTCTTGATGCCACTGCCCACTCCTCATCAGTCTATACACTATATTGGGAATGAATTTGGAGGTCAGGGTCTAGATAACTTTGATATAATGAATGGCGCCATTGGCAACAGCAGCTTTGATGCAGGGAATAGTACTGATTTTGGCAACGTCCCTGGGTTCGATTCAACTGATTATGTATATCCGATGATTGACTATGGCAACGATGCTGCACCGATGCCTTCAAACATGAATGGCAACTACGGTCGGCAGCTATAG 1089 0.438 MNLSELSEDASLQTVEGKAEVQNSSSEGGELFYLNSLPPGYRFYPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYGYDPDELAVRYEPSGNDEWFYFTPRERKYRNGQRPNRSIGEGYWKATGAEKEIKFEDRTVGYRKALVFYRGSPQNGVKTNWIMHEFTVAKPTGPPRRSGANDMRLDDCVLCRVCRTDERIYKRSRHASRLDESGSSSSKIPRLDLNPNPNEVNNPYEEQYYYNSIQMPLQAQQQQPRTEIFQAPQEPDHFALQSTQYPILDPSVLMPLPTPHQSIHYIGNEFGGQGLDNFDIMNGAIGNSSFDAGNSTDFGNVPGFDSTDYVYPMIDYGNDAAPMPSNMNGNYGRQL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0248 362 PANTHER NAC TRANSCRIPTION FACTOR 56 37 232 - -
Vvi6g0248 362 Gene3D NAC domain 46 196 IPR036093 GO:0003677|GO:0006355
Vvi6g0248 362 FunFam Uncharacterized protein 46 195 - -
Vvi6g0248 362 ProSiteProfiles NAC domain profile. 37 191 IPR003441 GO:0003677|GO:0006355
Vvi6g0248 362 SUPERFAMILY NAC domain 31 191 IPR036093 GO:0003677|GO:0006355
Vvi6g0248 362 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g0248 362 MobiDBLite consensus disorder prediction 208 230 - -
Vvi6g0248 362 Pfam No apical meristem (NAM) protein 38 162 IPR003441 GO:0003677|GO:0006355
Vvi6g0248 362 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0248 Vvi-Chr6 2783467 2784913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0248 35 203 NAC Transcription Factor Family AT3G04070 50.000 4.98e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0248 NAM 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0248 - - vvi:104879625 731.48