Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0247 ATGGTGGGTGGTACGCAAGTGCCTGTTGGTGGTTCTAGAATTCCAAAGCCAGAAGAAGAAAAAGAAGAAGAAATACGCATTCTGGATTACAGATTCAAGAACAAAGATGAGTTCCTGAATTCTATGCCTCCTGGCTACAGGTTCTCCCCTACTGATGAAGAGGCCATCTTATATTTCTTGAGGCCCAAGATTGAAAACAAGCCATTGCCCATTAACGGGATCATGGAAGTCAATATCTATCAGTATGATCCTGAGGATCTTACAGCGCTGTTTCCTCCATGCGGGAACCACAAAGATGGGATTGACCAATGGTTCTTCTTTACACCAAGAGACAGAAAGTATCCAAATGGGATGCGACCCAGCAGAAGGGCTGGCAAGGGATATTGGAAGGCCATTGGGGGTGATAAGGCTGTCAAATGCGAGAATCAAACCATTGGGTACAGAAAGGTGTTGGTTTTCTGCAGGGGAAATGCACCAAAGGGGGAGAAAACCAATTGGATCATGTATGAGTTTAGAGGCAAGGAACCCCCAAGAAGCCCTAGTGCAAATACCATGAGGTTGGACATTGTGTTAAGCAAAATTTATAAGCAACCTAACAAACCCCTTACAAGAAGATCATCAACCCATGTACCAGAGTCCGAGCCTGAGCCTCCTCAACCAGTGAAGGTTGAAGCTGGTGGAATGGAGCAAAATGGGGATCAAACAAGGCTTTTCACACAAGGCACAGGTCAGGAGCTGAACCAAATAATAAGTTATGCCGATCCATACGAGGAGCAGTGCTATTATAATAGCAGCCAGATGCCTCTCCAAACCCAACAGCCACAGCCCACAACTGAAATATTCCAAACCCCTCAAGAACATGATAATTTTGCTCTGCAAAGCAACACCCAATTCCCTATCCTGGACCCTAGTGTCTTCATGCCATTTCCCACTCTTCATCAGCCTATACACTCTATAGGGAATGAATTTGGAGGTCAGGGTCTAGATAACTTCGATATAATCAATGGCGCCTTTGGCAACAGCAGCTTTGATGCAGGGAATAATATTGATTTTGGCAATGTCCCTGACTTGGATGCATCTATTGTGTTCGGCAACGTCCCTGGGCTCGATTCAACTGATTATGGAAACCCGGGTTTATGTCCGATGTCTTCAAACATGAATGGCAACTACGGCCGGCAGCTATAG 1185 0.4549 MVGGTQVPVGGSRIPKPEEEKEEEIRILDYRFKNKDEFLNSMPPGYRFSPTDEEAILYFLRPKIENKPLPINGIMEVNIYQYDPEDLTALFPPCGNHKDGIDQWFFFTPRDRKYPNGMRPSRRAGKGYWKAIGGDKAVKCENQTIGYRKVLVFCRGNAPKGEKTNWIMYEFRGKEPPRSPSANTMRLDIVLSKIYKQPNKPLTRRSSTHVPESEPEPPQPVKVEAGGMEQNGDQTRLFTQGTGQELNQIISYADPYEEQCYYNSSQMPLQTQQPQPTTEIFQTPQEHDNFALQSNTQFPILDPSVFMPFPTLHQPIHSIGNEFGGQGLDNFDIINGAFGNSSFDAGNNIDFGNVPDLDASIVFGNVPGLDSTDYGNPGLCPMSSNMNGNYGRQL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0247 394 SUPERFAMILY NAC domain 40 197 IPR036093 GO:0003677|GO:0006355
Vvi6g0247 394 ProSiteProfiles NAC domain profile. 42 197 IPR003441 GO:0003677|GO:0006355
Vvi6g0247 394 PANTHER NAC TRANSCRIPTION FACTOR 56 42 251 - -
Vvi6g0247 394 Gene3D NAC domain 51 201 IPR036093 GO:0003677|GO:0006355
Vvi6g0247 394 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g0247 394 MobiDBLite consensus disorder prediction 198 222 - -
Vvi6g0247 394 Pfam No apical meristem (NAM) protein 43 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0247 Vvi-Chr6 2781427 2782867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0247 40 203 NAC Transcription Factor Family AT3G04070 46.857 2.05e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0247 NAM 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0247 - - vvi:109122773 787.334