Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0246 ATGGACTTCATAAACACACAGAGGGAGATGGTGGGTAGTACGCAAGTGCCTGTTGGTGGCTTTAGAATTCCAAAGCTAGAAGAAGCAGAAGAAGAAATACGCATTCTGGATTATAGATTCAAAAACAAAGATGAGTTCCTGAATTCTATGCCTCCTGGCTACAAGTTCTCCCCTACTGATGAAGAGGTCATCTTGTATTACTTGAGGCCCAAGATTGAAAACAAGCCATTGCCCATTAACAGGATCGTGGAAGTTGATCTCTATCAGTATGATCCAGAGGATCTTACAGCGTTGTTTCCTCCATGCGGGAACTATAATGATGAGATTGCCGCATGGTTCTTCTTTACACCAAGAGACAGAAAGTATCCAAATGGGATGCGACCCAGCAGGAGGGCTGGCAAGGGATACTGGAAGGCCATTGGGGGTGATAAGGCTATCAAATGTGAGGATCAAACCATTGGGTACAGAAAGGTGTTGGTTTTCTGCAGGGGAAAGACACCAAAGGGGGAGAAAACCAATTGGATCATGTATGAGTTTAGAGGCAAGGAACCCCCAAGAAGCCCTAGTGCAAATACCATGAGGTTGGACATTGTGTTAAGCAAAATTTATAAGCAACCTAACAAACCCCTTAGAAGAAGATCATCAACCCATGCACCAGAGCCCGAGCCTGAGCCTCCTCACCCTGTGAAGGTTGAATCTGGTGGAATGGAGCAAAATGGGGTCAAACAAGGCTTTTCACGCAAGGCACAGCCACAGCCCAAAACTGAAATATTCCAAACCCCTCAAGAACAGGATAATTTTGCTCTGCAAAACAACACCCAATTCCCTATCCTGGACCCTAGTGTCTTCATGCCACTTCATCAGCCTATACACTCTATTGGTCAGGGTCTAGATTACTTCGATAGAATGAATGGCGCCATTGGCAACAGCAGCTTTGATGCAGGGAATAATATTGATTTTGGCAACGTCCCTGGGTTTGATTCAATTGATTATGGAAACCCGGGTATATGTCCGATGATTAATTATGGCAACGATGCTGTACCAATGTCTTCAAACATGAATGGCAACTACGACCGTCGTTTGCTGCATGGAAGAAACAATAATCGACAGCTATAG 1116 0.4471 MDFINTQREMVGSTQVPVGGFRIPKLEEAEEEIRILDYRFKNKDEFLNSMPPGYKFSPTDEEVILYYLRPKIENKPLPINRIVEVDLYQYDPEDLTALFPPCGNYNDEIAAWFFFTPRDRKYPNGMRPSRRAGKGYWKAIGGDKAIKCEDQTIGYRKVLVFCRGKTPKGEKTNWIMYEFRGKEPPRSPSANTMRLDIVLSKIYKQPNKPLRRRSSTHAPEPEPEPPHPVKVESGGMEQNGVKQGFSRKAQPQPKTEIFQTPQEQDNFALQNNTQFPILDPSVFMPLHQPIHSIGQGLDYFDRMNGAIGNSSFDAGNNIDFGNVPGFDSIDYGNPGICPMINYGNDAVPMSSNMNGNYDRRLLHGRNNNRQL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0246 371 Gene3D NAC domain 59 209 IPR036093 GO:0003677|GO:0006355
Vvi6g0246 371 MobiDBLite consensus disorder prediction 206 254 - -
Vvi6g0246 371 Pfam No apical meristem (NAM) protein 51 180 IPR003441 GO:0003677|GO:0006355
Vvi6g0246 371 SUPERFAMILY NAC domain 48 205 IPR036093 GO:0003677|GO:0006355
Vvi6g0246 371 MobiDBLite consensus disorder prediction 239 254 - -
Vvi6g0246 371 PANTHER NAC TRANSCRIPTION FACTOR 56 50 246 - -
Vvi6g0246 371 ProSiteProfiles NAC domain profile. 50 205 IPR003441 GO:0003677|GO:0006355
Vvi6g0246 371 MobiDBLite consensus disorder prediction 213 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0246 Vvi-Chr6 2776621 2778179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0246 48 210 NAC Transcription Factor Family AT3G04070 47.701 5.37e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0246 NAM 8.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0246 - - vri:117917093 697.967