Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0245 ATGAATCTTTCAGAGCTTAGTGAGGATGCAAGTCTACAAACAGTAGAGGGAAAAGCAGAAGAAGTGCAGAATAGTAGTAGTAAAGGTGGAGAGCTTTTTGATCTTAATTCTTTACCACCAGGATACAGATTTAATCCCACAGATGCAGAGATTATAGTTTTCTACTTGAGGAAGAAGATTGATCATCAGTCATTGCCACCCAACAAGATAATAGAAGTCAATCTTTATGGTTATGATCCTGATGAACTTGCAGCGAGATACGAGCCATCCGGGAATGATGAATGGTTCTATTTCACTCCAAGGGAAAGGAAATATCGGAATGGGCAACGTCCCAATAGGTCAATTGGAGAAGGATACTGGAAGGCCACCGGAGCTGATAAAGAGATCAAATTTGAGGATCGAACGGTGGGGTATCGGAAGGCTTTAGTCTTCTACCGAGGAAGTGCTCAAAACGGAGTCAAAACCAACTGGATCATGCATGAATTCACAGTTGCTAAACCTCCAGGGCCTCCAAGAAGAAGTGGTGTCAATGATATGAGGTAG 543 0.4254 MNLSELSEDASLQTVEGKAEEVQNSSSKGGELFDLNSLPPGYRFNPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYGYDPDELAARYEPSGNDEWFYFTPRERKYRNGQRPNRSIGEGYWKATGADKEIKFEDRTVGYRKALVFYRGSAQNGVKTNWIMHEFTVAKPPGPPRRSGVNDMR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0245 180 Pfam No apical meristem (NAM) protein 39 163 IPR003441 GO:0003677|GO:0006355
Vvi6g0245 180 MobiDBLite consensus disorder prediction 1 31 - -
Vvi6g0245 180 ProSiteProfiles NAC domain profile. 38 180 IPR003441 GO:0003677|GO:0006355
Vvi6g0245 180 SUPERFAMILY NAC domain 32 169 IPR036093 GO:0003677|GO:0006355
Vvi6g0245 180 Gene3D NAC domain 47 179 IPR036093 GO:0003677|GO:0006355
Vvi6g0245 180 PANTHER NAC TRANSCRIPTION FACTOR 56 38 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0245 Vvi-Chr6 2766401 2773290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0245 36 179 NAC Transcription Factor Family AT3G04070 49.673 8.47e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0245 NAM 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0245 - - vvi:104879626 376.326