Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0241 ATGGGAAATTGCTGTGCATCACCTGGTTCTGAGAAAGAAAACCCATATTTAATTGATTACAATGTGCTTCACGGATCTGTCAGTAGGAACAGGGGCCCGGTTCTGAAAGACCCAACTGGGCGTGACATTTCTCTCAAATACGAGCTCGGACGCGAGATGGGGAGAGGGGAATTTGGGGTAACGTATATGTGTACTGAGAAATCCACAAACGAAAAGTATGCCTGCAAATCGATAGCAAAGAAGAAGCTTAGAACTGCTGTAGATATCGAGGACGTGAGAAGAGAGGTGCAGATTATGAAGCGTTTGCCTATGCACCCGAATATTGTGTCGTTGAAAGACACATTTGAGGACGAGAATGCCGTTCATATTGTGATGGAATTGTGTGAAGGCGGAGAATTGTTTGATAGGATTGTTTCCAGGGGGCATTACACTGAGCGGGCGGCTGCAGGTGTCATGAGGACAATTGTGGAAGTTGTGCAGATCTGCCACAAGCATGGAGTGATGCATCGTGATCTCAAACCAGAGAACTTTCTGTTTGCAAACAAAAAGGAAGCTGCCCCCTTAAAGATAATTGATTTCGGGTTGTCAGTCGACTTTAAACATGGCGAACGATTTTCTGAGATAGTGGGCAGTCCTTATTACATGGCTCCTGAGGTTCTGAAACACAATTATGGCCCAGAGATTGATATCTGGAGTGCAGGAGTTATCCTATACATTTTACTTTGTGGCATTCCACCTTTCTGGGCAGAAACTGAACAAGGGGTAGCACAGGCAATTATTCGTGCAGTTGTTGATTTTAAGAGAGACCCTTGGCCTAAAGTTTCTGATAAAGCAAAAGAACTTGTGAAGAAAATGCTTGATCCAGACCCTAAAAAGCGGCTTACAGCTCAGGAAGTGCTTGATCACCCATGGTTACAAGATGCCAAGAGCGTTCCCAATGTTTCTTTAGGTGAGTCTGTGAAGGCAAGGCTCAAACAATTTTCCATGATGAACAAGCTCAAAAAGAAAGCCTTGCAGGTGATGGCAGAACATCTATCCATGGAGGAAGTTGCTGGAATAAAGGAGGCATTCAAAACAATGGATATCAACAACAGAGGCCAGATAAACCTTGACGAGCTTAGGAGTGGATTGCAAAAGCTTGGCCAACCAATTCCTGATTCAGATCTTCAAATCCTAATGGAAGCTGCTGATCTTGATGGAGATGGAACTCTGAATTATGCAGAGTTTGTTGCGGTTTCAATTCACATTAAAAAGATAACAAATGAGGAACACCTGCACAAGGCTTTTGCATTCTTTGATCAAAACCAGAGTGGTTACATAGAGATTGAAGAGCTACAAAATGCCTTAGCTGATGAACTTTCCACTAACAGTGAGGAAGTGATCAATGCCATTATGCATGATGTTGACACTGATAAGGATGGGCGCATAAGCTACGAGGAGTTTGCTGCAATGATGAAGGCTGGTACAGATTGGAGAAAAGCATCGAGGCAATATTCACGAGAACGATTCAACACTCTCAGCTTGAAGTTGACGAGGGATGGGAAGGATGGGCAATGA 1557 0.4374 MGNCCASPGSEKENPYLIDYNVLHGSVSRNRGPVLKDPTGRDISLKYELGREMGRGEFGVTYMCTEKSTNEKYACKSIAKKKLRTAVDIEDVRREVQIMKRLPMHPNIVSLKDTFEDENAVHIVMELCEGGELFDRIVSRGHYTERAAAGVMRTIVEVVQICHKHGVMHRDLKPENFLFANKKEAAPLKIIDFGLSVDFKHGERFSEIVGSPYYMAPEVLKHNYGPEIDIWSAGVILYILLCGIPPFWAETEQGVAQAIIRAVVDFKRDPWPKVSDKAKELVKKMLDPDPKKRLTAQEVLDHPWLQDAKSVPNVSLGESVKARLKQFSMMNKLKKKALQVMAEHLSMEEVAGIKEAFKTMDINNRGQINLDELRSGLQKLGQPIPDSDLQILMEAADLDGDGTLNYAEFVAVSIHIKKITNEEHLHKAFAFFDQNQSGYIEIEELQNALADELSTNSEEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFNTLSLKLTRDGKDGQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0241 518 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Vvi6g0241 518 SMART serkin_6 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0241 518 Gene3D Phosphorylase Kinase; domain 1 49 132 - -
Vvi6g0241 518 SMART efh_1 424 452 IPR002048 GO:0005509
Vvi6g0241 518 SMART efh_1 352 380 IPR002048 GO:0005509
Vvi6g0241 518 SMART efh_1 388 416 IPR002048 GO:0005509
Vvi6g0241 518 SMART efh_1 460 488 IPR002048 GO:0005509
Vvi6g0241 518 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Vvi6g0241 518 FunFam Calcium-dependent protein kinase 7 314 489 - -
Vvi6g0241 518 CDD STKc_CAMK 46 304 - -
Vvi6g0241 518 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Vvi6g0241 518 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Vvi6g0241 518 Pfam EF-hand domain pair 353 411 IPR002048 GO:0005509
Vvi6g0241 518 Pfam EF-hand domain pair 422 486 IPR002048 GO:0005509
Vvi6g0241 518 FunFam Calcium-dependent protein kinase 1 49 132 - -
Vvi6g0241 518 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Vvi6g0241 518 CDD EFh 424 486 IPR002048 GO:0005509
Vvi6g0241 518 SUPERFAMILY EF-hand 334 510 IPR011992 -
Vvi6g0241 518 Pfam Protein kinase domain 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0241 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vvi6g0241 518 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Vvi6g0241 518 ProSiteProfiles Protein kinase domain profile. 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0241 518 FunFam calcium-dependent protein kinase 13 133 313 - -
Vvi6g0241 518 Gene3D - 314 488 - -
Vvi6g0241 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 481 - -
Vvi6g0241 518 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Vvi6g0241 518 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Vvi6g0241 518 Gene3D Transferase(Phosphotransferase) domain 1 133 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0241 Vvi-Chr6 2714924 2721335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0241 1 514 EF-hand Containing Proteins AT5G19450 77.524 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi6g0241 Pkinase 9.8e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0241 K13412 - vvi:100267353 1041.95