Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0238 ATGACAGGGGGGAATACAAACAATTCTCCTTCATCTGAATGTCCAAATGGTGGTTCAGAATCCAATGATGGTCAGTCACATTCTAATGGTGGACTGAATGAGGAAGATGATGATAGTATCAAAGAATCACAAGCTACTGCATCCTCACAATCAAATGGGAACTATGGACAAGAACATCAGAATTTGCAGCATATTGCACCCAATATACAGATAGGAAGTTCTGAATGCCTCACACAGCCTCCACAGCTTGAACTTGTTGGTCACTCAATTGCTTGTGCGTCAAATCCATATCAGGATCCATATTATGGGGGGATGATGACAGCTTATGGACCTCAGCCTTTGGTTCATCCTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAGTGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTCACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCTCCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGA 921 0.4582 MTGGNTNNSPSSECPNGGSESNDGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQPPQLELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYVNPKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKSAAEASKHASEEKVTALGSAPSPQSVSSSGSERLPSDSTETWNSSSRQQEARGPQAHDTHEPPKYKNGSGYYQSPGDSQTTNHSHTSERGEEDQQWKSFSADQGSQRPHAFQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0238 306 MobiDBLite consensus disorder prediction 170 189 - -
Vvi6g0238 306 ProSiteProfiles NF-YA/HAP2 family profile. 134 194 IPR001289 GO:0003700|GO:0006355
Vvi6g0238 306 MobiDBLite consensus disorder prediction 1 29 - -
Vvi6g0238 306 MobiDBLite consensus disorder prediction 291 306 - -
Vvi6g0238 306 MobiDBLite consensus disorder prediction 211 246 - -
Vvi6g0238 306 SMART cbf3 133 194 IPR001289 GO:0003700|GO:0006355
Vvi6g0238 306 MobiDBLite consensus disorder prediction 43 57 - -
Vvi6g0238 306 Gene3D - 134 196 - -
Vvi6g0238 306 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 252 IPR001289 GO:0003700|GO:0006355
Vvi6g0238 306 MobiDBLite consensus disorder prediction 1 57 - -
Vvi6g0238 306 MobiDBLite consensus disorder prediction 170 306 - -
Vvi6g0238 306 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 137 191 IPR001289 GO:0003700|GO:0006355
Vvi6g0238 306 PRINTS CCAAT-binding transcription factor subunit B signature 168 191 IPR001289 GO:0003700|GO:0006355
Vvi6g0238 306 PRINTS CCAAT-binding transcription factor subunit B signature 137 159 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0238 Vvi-Chr6 2680896 2687405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0238 4 239 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.962 1.19e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi6g0238 CBFB_NFYA 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0238 K08064 - vvi:100251945 614.764