Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0228 ATGTGTAGTGGTCCGAAGAAGATGGATCCCAAGACTCCAGCTCCATCCTCGACCCCAGAAACCAACACTTCAACTAAAGATATGAATAAGCCAACCGGAGAGGTTGAAAGTGAAAATTCATTTTCTAGTTTGCTTGAATTTGCAGCAAACAATGATGTTGAGGGCTTCCAGAAATCCATTGCGCTTAATGGATCTGCGATTGATAAGGTTGGTCTGTGGTATGTTCATCGAAAGGTGTCGAAACAGATGGTTCTTGAACACAGAACTCCATTAATGGTGGCGGCTATGTATGGTAGTGTTGATATTGTGAAGCTGATACTTTCTCTATCTGAGGCCGATGTAAATCGGTCCTGTGGCCCAGATAAGAGTACTGCCCTTCACTGTGCTGTGTCTGGTGGAACTGTCAATGCTGTTGATGTTGCCAAATTACTTTTACTGGCTGGTGCTGATCCTAACTCCACTGATGCCCAAGGGCATCGACCTTTTGATGTTATTGATGTCTCTCCAAAGCTTCCAGATTTGAAAGCTACCCTTGAAGAGCTTCTAAAAAATGATGATTTTGTTTATCAGCAGGATTTCCAGATTTCCACTGTGAGTTTGAAATCCAGTTCCCCATCCCTCTCATCATCCCCAGATAATTGTTCTTTATCTGGTGTCTCAGAGTCAATGTCACCACCACTTGCTTCCAGGCTCAGTGATATCCATGTGTCTTCCATGCCGGAGAAGAAAGAATACCCAGTTGACCCATCTCTTCCTGACATCAAGAACAGCATTTATGCCACTGATGAGTTCCGAATGTACTCGTTTAAGATCCGGCCTTGCTCCCGAGCATATTCCCATGATTGGACTGAATGTCCTTTTGTACATCCAGGTGAGAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGTTGTGTGCCATGTCCAGAGTTTCGCAAGGGGGCTTGTAGGCGTGGGGACTTGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAGTATAGGACCAGACTCTGCAAGGATGGCACAAGTTGCATGCGTCGGGTCTGTTTCTTTGCCCACACCTCTAAGGAACTCCGTCCCCTCTATATGTCCACAGGATCTGGTGTTGCATCTCCACGATCTGCTGCTAATGCAATGGACATGGCTTCGGCCTTGAGCCTCTTTCCTGGCTCCCCTTCAGCCGTTTCTGCTATGTCACCTTCACCATTTACACCACCAATGTCTCCTGCAGGGGTTGCTATTTCACACTCATCAATGGCTTGGCCGCAGCAAAGCATCCCTACTTTGCATCTCCCAGGCAGCAATCTCCAAACAAGTCGCCTTAGATCATCTTTGAGTGCAAGAGACATGCTGGTTGAGGAGTTCAATGTGCTGCAGGATTTTGATGTGCAGCAGCAGCAGCTCCTAAACGATTTGTCTCATTTCACACAACCAAATCTCAGTTCTGCATCTGGAAATCTCTCTGTTCGATCAAAGGCCCTAACCCCTTCAAATCTTGATGAGCTTTTCTCTGCTGAGATGTCATCTCCCCGGTATGCTGATCACGTTGCTGCTTCAACCATGTTCTCCCCATCGCATAAATCAGTGGTTCTAAATCAATTCCAGCACCAGCAGGGCATGTTGTCTCCTATAAAGACAAATGTATTCTCTCCAAAGAATGTTGATCATCCTCTCCTGCAAGCCTCCTTTGGTGTTTCTTCTCCTGGGAGGATGTCACCTCGAGGCATTGAGCCTCTCTCCCCATTGAGCTCTCGTTTTTCCTCTCTGGCTCATCGTGAGAAGCAGCAGCAACACCTACGCAGCCTCAGCTCACGGGATCTTGGTTCCAATGGTGCTGGAATTGTTAATTCCCCTGCAAATTCTTGGTCCAAATGGGAATCCCCCAATGGGAAAATAGATTGGTCTGTTCAAGGAGAAGAACTGGCTTGGCACCGTAAAACTTTTTCAATTGAGCAAAATAGGGAGGGGCCTGATCTTTCATGGGTTCAATCACTGGTGAAGGAGTCACCTCCGGGGATCCAAGAAACCCCAACTCTACCAGTTTCAGGCATGACAGTTTCTGCTGATGGTTCTAATTCCATTTCTAGAATTGACTCCATTGATCATGCAGTTTTGGGAGCATGGCTTGAGCAGATGCAACTCGATCAGATCGTTGCTTAA 2178 0.4665 MCSGPKKMDPKTPAPSSTPETNTSTKDMNKPTGEVESENSFSSLLEFAANNDVEGFQKSIALNGSAIDKVGLWYVHRKVSKQMVLEHRTPLMVAAMYGSVDIVKLILSLSEADVNRSCGPDKSTALHCAVSGGTVNAVDVAKLLLLAGADPNSTDAQGHRPFDVIDVSPKLPDLKATLEELLKNDDFVYQQDFQISTVSLKSSSPSLSSSPDNCSLSGVSESMSPPLASRLSDIHVSSMPEKKEYPVDPSLPDIKNSIYATDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCMRRVCFFAHTSKELRPLYMSTGSGVASPRSAANAMDMASALSLFPGSPSAVSAMSPSPFTPPMSPAGVAISHSSMAWPQQSIPTLHLPGSNLQTSRLRSSLSARDMLVEEFNVLQDFDVQQQQLLNDLSHFTQPNLSSASGNLSVRSKALTPSNLDELFSAEMSSPRYADHVAASTMFSPSHKSVVLNQFQHQQGMLSPIKTNVFSPKNVDHPLLQASFGVSSPGRMSPRGIEPLSPLSSRFSSLAHREKQQQHLRSLSSRDLGSNGAGIVNSPANSWSKWESPNGKIDWSVQGEELAWHRKTFSIEQNREGPDLSWVQSLVKESPPGIQETPTLPVSGMTVSADGSNSISRIDSIDHAVLGAWLEQMQLDQIVA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0228 725 SMART ANK_2a 86 116 IPR002110 GO:0005515
Vvi6g0228 725 SMART ANK_2a 121 153 IPR002110 GO:0005515
Vvi6g0228 725 MobiDBLite consensus disorder prediction 14 36 - -
Vvi6g0228 725 Gene3D - 37 177 IPR036770 -
Vvi6g0228 725 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Vvi6g0228 725 Pfam Ankyrin repeats (3 copies) 63 155 IPR002110 GO:0005515
Vvi6g0228 725 FunFam Zinc finger CCCH domain-containing protein 66 261 329 - -
Vvi6g0228 725 Gene3D - 304 366 - -
Vvi6g0228 725 ProSiteProfiles Zinc finger C3H1-type profile. 308 330 IPR000571 GO:0046872
Vvi6g0228 725 MobiDBLite consensus disorder prediction 1 36 - -
Vvi6g0228 725 MobiDBLite consensus disorder prediction 201 221 - -
Vvi6g0228 725 SUPERFAMILY Ankyrin repeat 46 164 IPR036770 -
Vvi6g0228 725 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Vvi6g0228 725 SMART c3hfinal6 303 329 IPR000571 GO:0046872
Vvi6g0228 725 SMART c3hfinal6 338 361 IPR000571 GO:0046872
Vvi6g0228 725 Pfam CCCH-type zinc finger 308 328 IPR041367 -
Vvi6g0228 725 PANTHER UNKEMPT FAMILY MEMBER 46 675 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0228 Vvi-Chr6 2606010 2608187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0228 1 722 C2H2 Transcription Factor Family AT5G12850 54.386 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi6g0228 Ank_2 1.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0228 - - vvi:100263975 1399.42