Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0223 ATGAGGAAGCCTGAGAAGAGTACTGCCAATGGTGCCTGCAGCAACACCACTTCTACTGGTAGCAAGCTTAGGAAGGGGCTGTGGTCACCTGAGGAAGACGACAAGCTGATGAACTACATGCTGAATAATGGGCAGGGCTGTTGGAGTGATGTTGCCAGGAATGCCGGCCTCCAGAGGTGTGGCAAGAGCTGCCGCCTCCGCTGGATTAACTACTTGAGGCCGGACCTTAAACGCGGCGCCTTCTCGCCTCAGGAGGAGGAGCTCATCATCCACTTGCATTCCCTTTTAGGCAACAGGTGGTCTCAAATTGCGGCCCGCTTGCCAGGACGTACTGACAATGAGATAAAGAATTTTTGGAACTCGACGATAAAGAAGAGGCTCAAGAACTCGTCATCAGTGCCCTCACCAAACGCGAGCGATTCGTCATCTGATCAGCCTAGGGATGTCATGGGAGGGCTCATGTCGATGAGAGAACAAGGGCTAATGGCTATGTACATGGATTCATCGTCTTCGCCACCATCCATCCAAGCCATGGCAGCTCTGAACCAGATGATTGAGCCATTGCCCATGCTGGAGCCTAGCGTAGACATGACCAGTGTTAACAGCGGATGCTTCAATGCGCCTCCCTGCATGACCCAAGTTGGAATTTTGAGTGCTGAGGGGCTTTATGGGGATCATGTTGGGCTCCTTGGAGGAGGAGGAGGTTGTGTTGTTGGGGAGCAATTTTTTCCACCCGTAGAGAGTATAAGCATGGGCGAAAATGGTAACAAAACCCTCGAAAATACCTTTGATAGGAACCCTAATAACAACCCCTATAACAACGTCATCATCAACAACAACAGTAGCAACAAAGTAGAAAACATGGTTGGGGTTGGAAACTTTTGGGAAGGTGAAGATCTTAGAATTGGGGAATGGAACTTGGAGGACTTGATGAGGGATGTCTCCTCCTTTCCTTTCCTTGATTTCCATGTTGAGTAA 978 0.498 MRKPEKSTANGACSNTTSTGSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNSSSVPSPNASDSSSDQPRDVMGGLMSMREQGLMAMYMDSSSSPPSIQAMAALNQMIEPLPMLEPSVDMTSVNSGCFNAPPCMTQVGILSAEGLYGDHVGLLGGGGGCVVGEQFFPPVESISMGENGNKTLENTFDRNPNNNPYNNVIINNNSSNKVENMVGVGNFWEGEDLRIGEWNLEDLMRDVSSFPFLDFHVE* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0223 325 Gene3D - 79 149 - -
Vvi6g0223 325 CDD SANT 80 120 IPR001005 -
Vvi6g0223 325 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vvi6g0223 325 PANTHER MYB DOMAIN PROTEIN 55 19 282 - -
Vvi6g0223 325 MobiDBLite consensus disorder prediction 1 27 - -
Vvi6g0223 325 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vvi6g0223 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Vvi6g0223 325 Gene3D - 22 78 - -
Vvi6g0223 325 SMART sant 24 74 IPR001005 -
Vvi6g0223 325 SMART sant 77 125 IPR001005 -
Vvi6g0223 325 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Vvi6g0223 325 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vvi6g0223 325 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Vvi6g0223 325 MobiDBLite consensus disorder prediction 127 150 - -
Vvi6g0223 325 CDD SANT 28 72 IPR001005 -
Vvi6g0223 325 FunFam Transcription factor MYB46 79 149 - -
Vvi6g0223 325 FunFam MYB transcription factor 22 78 - -
Vvi6g0223 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vvi6g0223 325 MobiDBLite consensus disorder prediction 8 24 - -
Vvi6g0223 325 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0223 Vvi-Chr6 2573421 2575343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0223 1 325 MYB Transcription Factor Family AT3G08500 46.328 1.62e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g0223 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0223 K09422 - vvi:100243210 593.193