Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0217 ATGTTAACTTTCAATTGGGATTCAAGAAAGGAAAACAAAAAATTTAGAAAAATGATTTTCCCACAGAAAATCCATCCCCCATTCGATTTCCGGGGAAATTCATCCTCGTTTGATTTCCGAGAAAATCCATTCAAAACCCCCAAAGAAAACCAAAAAGTTTGCTTTTCTTTTGCTTCCTGTGTTTTCTGGATCTGTTTTAAGGGTCTCTTTGCTGTTGTGCCATTGGATTTAAATTTCACGAACCCTAAATCCACGATTTTTGAGCCAGATTTTGTATCCTGTGCGCGGGCTGTGATGGCTGAAACCCCCCGAAAATCCTTCCATTCCCCCAGAAAAGCCCATAAACCCTCTCCTTCAACTCCCATCATCCCTCAAACGCCGCAAACCGTAACTCCTAGTCGATCCTCGCGCCAAGTCTCAAGCCCAGATCCATCAGATCTTCGCCGTTCATCTCGCCGGTCGTCCCTGCAATTCTTGGAACCTGAAAAGCGCTCTTCAAAAGCCACAAAATATGTGAAAAAGGGTGAAAGATCGAAGCTTCCGGTCACTCCTGATGTGTCAGAGGCGCGGAAGAGGAAGAGCCCTGATGAGGGAAATGTGGTGACTAGGGCTAGGGTTTCGAGGAATGCGGGTTTGATGCGGAAGAAGCGGGTTTATTACAAGAAGGTTGTGTATGATGGGGGTGAATTTGCGGTGGGCGATGATGTGTATGTGAAAAGAAGGGAAAATGCGAGCTCGGATGATGAAGAATTGCAAGTGGAGGAGTGTAGGGTATGCTTCAAGTCTGGAAGGGCTGTGATGATTGAGTGTGATGATTGTCTGGGTGGGTTTCATTTGAAGTGTTTGAAACCTCGGCTGAAGGAGGTTCCAGAAGGGGATTGGATATGCCAGTTTTGCGAGGCCCGGAAATTGGGTAAGGAAGTTGTGCTTCCAAAGCCACCCAAAGGGAAGAAACGGAAGAGAACTGCAAGGGAGAAGCTTCTTTCCAGTGATTTATGGACGGCTCATATTGAAAATATATGGAAAGAAGTGGATGGTACTTACTGGTTTCGTGGGCGATGGTATATCATCCCTGAAGAGACTGCAGCTGGAAGACAGTCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGATGGAATCCATCATTAGGCTTTGCTATGTAATGAGCCCAAAAGAATTTACCAAGGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATACATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAGGCAATGAAGAAGCTGACAATGATGTAGATTGGGATTATGGAAAGGACTCAGGCTCTGATACTGAAGAAGACATGGAATATGAAGAGGAAAATGTGAACAATTTACCCAGTGGACCATCCCCAGCTCATGCAGTTGCTGCAAATTCGTGGAAGGGAAGGATCTTTGGGCTAAAGAAAATTGGGACAAAGAAAATTCCAGGGCATGTGAGATGCCACAAGCAGACTGAACTTGAAAGAGCAAAAGCAACACTTCTGTTGGCAACTTTGCCCAAGTCTCTACCTTGCAGGACTAAGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTTTCAGTAATGAGAAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCACCAGAGAACATTTACAGGGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACAGTTACAAGAAATCATTTCAAGTCGTCTTAAAGGAATTGATGCATTTGAAAGGCAAGCTATAGAATTTGCTTCAAGAAAGGTGGCAGCTATTTCTGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCAGAACTTGCAGATTATCATATTAAAAAGCTAACTTCACCTCCTGATTCTTCTTCTGAAGGAAAAGCTCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCAAATTCAAGTGATGAAGAGTAGCTCAAAGCTGAGTAAAATCTTCTTGGTAGCAATGGTGCATGAACTCTATCAAACAGGAATGGCAGAGACTACTTTTAAAAAGTTGTCAGTGACTGTTTCATGCCTCTGTACAAGCAATGGAGAAAAGTTCCCTGGATGGGACACACTCTTGAGAGTTGGTTGTAAGCTTGGTGAATGCAGAATCATTCTATGTGAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATTTGTGA 2727 0.4283 MLTFNWDSRKENKKFRKMIFPQKIHPPFDFRGNSSSFDFRENPFKTPKENQKVCFSFASCVFWICFKGLFAVVPLDLNFTNPKSTIFEPDFVSCARAVMAETPRKSFHSPRKAHKPSPSTPIIPQTPQTVTPSRSSRQVSSPDPSDLRRSSRRSSLQFLEPEKRSSKATKYVKKGERSKLPVTPDVSEARKRKSPDEGNVVTRARVSRNAGLMRKKRVYYKKVVYDGGEFAVGDDVYVKRRENASSDDEELQVEECRVCFKSGRAVMIECDDCLGGFHLKCLKPRLKEVPEGDWICQFCEARKLGKEVVLPKPPKGKKRKRTAREKLLSSDLWTAHIENIWKEVDGTYWFRGRWYIIPEETAAGRQSHNLRRELYRTNDFADIEMESIIRLCYVMSPKEFTKANNEGDDIFLCEYEYDIHWHSFKRLAEINNGEEGNEEADNDVDWDYGKDSGSDTEEDMEYEEENVNNLPSGPSPAHAVAANSWKGRIFGLKKIGTKKIPGHVRCHKQTELERAKATLLLATLPKSLPCRTKEMEEITAFIKGAICNDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASPENIYRVIYEALSGHRVGWKKALHLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDAFERQAIEFASRKVAAISGDARRALEICRRAAELADYHIKKLTSPPDSSSEGKALVGMAEVEAAIQEMFQAPQIQVMKSSSKLSKIFLVAMVHELYQTGMAETTFKKLSVTVSCLCTSNGEKFPGWDTLLRVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALKDDKELPWLAKYL* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0217 908 MobiDBLite consensus disorder prediction 126 145 - -
Vvi6g0217 908 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 335 904 - -
Vvi6g0217 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 308 IPR013083 -
Vvi6g0217 908 Pfam PHD-finger 256 301 IPR019787 -
Vvi6g0217 908 ProSitePatterns Zinc finger PHD-type signature. 256 299 IPR019786 -
Vvi6g0217 908 Pfam BAH domain 336 425 IPR001025 GO:0003682
Vvi6g0217 908 SMART AAA_5 552 706 IPR003593 GO:0016887
Vvi6g0217 908 FunFam Origin recognition complex subunit 1 509 708 - -
Vvi6g0217 908 Gene3D - 704 797 - -
Vvi6g0217 908 SUPERFAMILY FYVE/PHD zinc finger 244 306 IPR011011 -
Vvi6g0217 908 ProSiteProfiles BAH domain profile. 300 428 IPR001025 GO:0003682
Vvi6g0217 908 FunFam Origin recognition complex subunit 1 705 797 - -
Vvi6g0217 908 Pfam ATPase family associated with various cellular activities (AAA) 557 702 IPR003959 GO:0005524|GO:0016887
Vvi6g0217 908 SMART PHD_3 255 300 IPR001965 -
Vvi6g0217 908 MobiDBLite consensus disorder prediction 433 456 - -
Vvi6g0217 908 Gene3D - 309 484 IPR043151 -
Vvi6g0217 908 Pfam AAA lid domain 730 765 IPR041083 -
Vvi6g0217 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 766 IPR027417 -
Vvi6g0217 908 MobiDBLite consensus disorder prediction 146 199 - -
Vvi6g0217 908 FunFam Origin recognition complex subunit 1 327 484 - -
Vvi6g0217 908 ProSiteProfiles Zinc finger PHD-type profile. 253 302 IPR019787 -
Vvi6g0217 908 Gene3D - 508 703 IPR027417 -
Vvi6g0217 908 FunFam Origin recognition complex subunit 1 251 318 - -
Vvi6g0217 908 SMART BAH_4 287 428 IPR001025 GO:0003682
Vvi6g0217 908 MobiDBLite consensus disorder prediction 103 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0217 Vvi-Chr6 2493763 2521397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0217 105 908 Core DNA Replication Machinery Family AT4G14700 64.053 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g0217 AAA 2.9e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0217 K02603 - vvi:100244935 1540.01