Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0216 ATGGAAGCACAAGCGCATCAGCAACAGCAATGGATGCATCCCAGCCATGCATCAGCAGCAACGGTGTCATCAATGGCTTCAGCTCAGCCGTACACACAACCTACCTCCGTCGAAGAAGTCAGAACTCTCTGGATTGGCGACTTGCAGTACTGGGTCGACGAAAACTACCTCCACTCCTGCTTCGCTCACACCGGCGAGGTGATTTCAATAAAGATAATACGTAACAAGATCACTGGCCAGCCAGAGGGTTATGGGTTTGTGGAGTTTGTATCTCATGCTGCAGCAGAGAGGATTCTGCAGGCATACAATGGGACACAAATGCCTGGAACCGAACAAACCTTCAGGTTGAATTGGGCTTCTTTTGGGATTGGAGAAAGGCGTCCTGATGCTGGGCCAGAGCATTCTATTTTTGTAGGGGATTTGGCACCTGATGTTACAGATTATTTGCTGCAAGAGACATTTCGAGCCCAATATCCATCAGTTAGAGGCGCCAAGGTTGTGACTGATCCAAATACTGGACGCACAAAGGGATATGGGTTTGTTAAGTTCTCTGATGAGATGGAAAGAAACCGTGCTATGACTGAAATGAATGGTGTCTATTGCTCAACCAGACCCATGCGGATTAGTGCAGCAACACCCAAAAAGACCACTGGTTTTCAACAGCAGTATGCTGCAGCAGCAAAAGCCTTATATCCAGCTCCTGCTTATACTACGCCACCATTGCAGGCTCTTCCAGCAGATAATGATATAAATAACACAACAATTTTTGTTGGTAACTTGGATCCTAATGTGACAGAAGAGGAATTGAAGCAAATCTTTTCACAGTTTGGGGAGCTTGTCTATGTCAAGATTCCTGCAGGCAGAGGATGTGGTTTTGTACAGTTTGGAACTAGGACATCTGCTGAAGAAGCAATCCAAAGGATGCAGGGAACTGTGATTGGTCAACTAGTAGTCCGGATTTCTTGGGGTCGGAGCCCAACAGCTAAACAGGACCTACCTGGTAGCTGGGGTCAGCAGGCAGATCCAAGTCAATGGAGCAGTGCCTATTATGGCTATGGACAAGGCTATGATGCATATCCTTATGGGGCTACTCAAGATCCTTCTTTGTATGCTTATGGTGCATATGCTGGTTACTTACAATACCCTCAACAGGCTGAGGGTGTTCAAGACTTGGCAGCTATGGCAGGTGCAGTTCCAGCCGTTGAACAGAGGGACGAGTTATATGATCCTTTAGCTACACCTGATGTGGACAAGTTAAATGCTGCTTACCTTGCTGTTCATGGAAGTGCCATTTTGGGCCGGTCTCTATGGCTAAAAACTTCACCATTCTCACAGATGGCCTAG 1344 0.4695 MEAQAHQQQQWMHPSHASAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSLYAYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSAILGRSLWLKTSPFSQMA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0216 447 FunFam polyadenylate-binding protein RBP45 237 332 - -
Vvi6g0216 447 SUPERFAMILY RNA-binding domain, RBD 241 355 IPR035979 GO:0003676
Vvi6g0216 447 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 329 - -
Vvi6g0216 447 FunFam Polyadenylate-binding protein RBP47B 125 224 - -
Vvi6g0216 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 111 IPR000504 GO:0003723
Vvi6g0216 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 200 IPR000504 GO:0003723
Vvi6g0216 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 317 IPR000504 GO:0003723
Vvi6g0216 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 325 IPR000504 GO:0003723
Vvi6g0216 447 Gene3D - 122 228 IPR012677 -
Vvi6g0216 447 CDD RRM2_SECp43_like 133 212 - -
Vvi6g0216 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 213 IPR000504 GO:0003723
Vvi6g0216 447 CDD RRM1_SECp43_like 42 122 - -
Vvi6g0216 447 SMART rrm1_1 42 117 IPR000504 GO:0003723
Vvi6g0216 447 SMART rrm1_1 135 209 IPR000504 GO:0003723
Vvi6g0216 447 SMART rrm1_1 254 321 IPR000504 GO:0003723
Vvi6g0216 447 SUPERFAMILY RNA-binding domain, RBD 40 215 IPR035979 GO:0003676
Vvi6g0216 447 Gene3D - 40 120 IPR012677 -
Vvi6g0216 447 Gene3D - 241 333 IPR012677 -
Vvi6g0216 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 121 IPR000504 GO:0003723
Vvi6g0216 447 FunFam Polyadenylate-binding protein RBP45 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0216 Vvi-Chr6 2481045 2491799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0216 42 313 Eukaryotic Initiation Factors Gene Family AT4G34110 27.875 4.73e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0216 - - vvi:100243203 842.032