Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0205 ATGAGCTGGAATCCACAAATGGATGCTCATTACATGAACACTAGCTATCCTTATAGTACAGTCGGAAGTTTTATGGATTATTTTGAAGGTCTTGCTTATGAACATGTGAATTTCATCTTTGCTACTGCTTCACACGGTCAGGAGAGTCCATATGCATCATCCATGAATACGAGTTTATACAAATTTGGGTTATCTGAAACAGGGAGTACTTCTTATTATGATTATGATCAGGCTTATGTGGTAAATGATCACGTTCCGGGAATTAGTGAATATAGAAGAACTCCAGAAAACTCTTCAGCCATTACCACGGACCAGATTCCAACAGTAAATACACAATGTGAAGGAAATACAAACACTACTACTACACATGCTACTCCAGTAGAATGCCCTCGGAGTCATCCCAATTCTCAGGATTATCAGGTCATTTGGCAAGACAACATTGATCCTGACAACATGACTTACGAGGAGTTACTAGAATTAGGTGAGGCAGTTGGAACTCAAAGTCGAGGCCTTTCTCAAGAACTTATTTCTTTGCTGCCAATTTCTAAGTACAAGTGTGGATTCTTCACAAGAAAGAAATCACGATGCGAGAGATGTGTCATTTGCCAAATGGAATATAAAAGACGTGATCGGCTGATCACTCTTCCATGCAAACATGTTTACCATGCTGCCTGCGGCACCAGATGGCTTAGCATCAACAAGGCTTGCCCCATTTGTTACACTGAGGTGATTGGTGAAGTACCAAAAATTGACAAATAA 759 0.4018 MSWNPQMDAHYMNTSYPYSTVGSFMDYFEGLAYEHVNFIFATASHGQESPYASSMNTSLYKFGLSETGSTSYYDYDQAYVVNDHVPGISEYRRTPENSSAITTDQIPTVNTQCEGNTNTTTTHATPVECPRSHPNSQDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQELISLLPISKYKCGFFTRKKSRCERCVICQMEYKRRDRLITLPCKHVYHAACGTRWLSINKACPICYTEVIGEVPKIDK* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0205 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 244 IPR013083 -
Vvi6g0205 252 Pfam Ring finger domain 198 239 IPR001841 -
Vvi6g0205 252 SUPERFAMILY RING/U-box 198 244 - -
Vvi6g0205 252 ProSiteProfiles Zinc finger RING-type profile. 199 239 IPR001841 -
Vvi6g0205 252 FunFam E3 ubiquitin ligase BIG BROTHER 161 244 - -
Vvi6g0205 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 245 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vvi6g0205 252 SMART ring_2 199 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0205 Vvi-Chr6 2374862 2382635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0205 5 246 C3H Transcription Factor Family AT3G63530 45.868 1.09e-70 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0205 K19045 - vvi:100265517 513.842