Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0202 ATGGATAATTCAGGTATGAGGGGTGGGTTTTTGTCGGGTGCGAGTGCGGGAATTTTAGACGTTGAAACTTCTATTCAGAGGCACCAGCAGGCCCAGATGAGTATTCCACCTCATACCCATCACCATCACATGAATGTGATGACTGGCTTTGAGAATGATCATTGTCCCATGGAAGCCAAGGGCTCAACCCCAAAGGGTATTCCTATAAATTATGGTAAAGGGAAGGTGATTGCTCCTGTTAGTGTTGCAAATAATGACAATAGCAATACTAGCGACGAGGATGAGCTAAGTTACACAGAAGATGGGAGCAGTGAGAACTTCGGTGGGGTGAAGGGTAAAAAGGGCTCTCCATGGCAGCGAATGAAATGGACAGATAATGTGGTGAGACTTCTTATAGCAGTGGTTGCTTGTGTTGGGGATGATGGTACCCTTGAGGGTGTGGAAGGACTGAAGAGGAAATCAGGAATTTTGCTGAAGAAGGGTAAATGGAAAACCGTCTCTAAGTTAATGATTAGTAAGGGTTGTTGCGTTTCACCTCAGCAGTGCGAGGATAAATTTAATGACTTGAACAAGAGATACAAGAGGTTGAATGAAATTCTTGGGAGGGGAACTACTTGTAGAGTGGTGGAAAACCCTGCACTAATGGACTCCATGCCCCCAACTATCTGCTAA 672 0.4494 MDNSGMRGGFLSGASAGILDVETSIQRHQQAQMSIPPHTHHHHMNVMTGFENDHCPMEAKGSTPKGIPINYGKGKVIAPVSVANNDNSNTSDEDELSYTEDGSSENFGGVKGKKGSPWQRMKWTDNVVRLLIAVVACVGDDGTLEGVEGLKRKSGILLKKGKWKTVSKLMISKGCCVSPQQCEDKFNDLNKRYKRLNEILGRGTTCRVVENPALMDSMPPTIC* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0202 223 Pfam Myb/SANT-like DNA-binding domain 120 210 IPR044822 -
Vvi6g0202 223 PANTHER F16F4.11 PROTEIN-RELATED 1 218 - -
Vvi6g0202 223 MobiDBLite consensus disorder prediction 82 115 - -
Vvi6g0202 223 Gene3D - 123 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0202 Vvi-Chr6 2352131 2352802 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi6g0202 Myb_DNA-bind_4 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0202 - - vri:117917158 450.669