Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0201 ATGGAGATCAATGGAAAAGATGAACTTAAGTTGCCTCTGTTGCAGCCTCTGGATGGTGTTGTAGTTACTGCATCTCAACCAAGTACCATCATAGACAAGAAAATTAAGACGGTTATGTTCAAAATAGGGAATATAGCGTGTGCATCTTGTGCAACATCCATAGAATCTGTACTTCTTGAGCTTAATGGGGTTGAGAGTGTTATGGTGTCGGTGCTTCAAGGTCAGGCTGCTGTTAAATACATACCAGAACTCATTACGGCAAATGCAATTAAAGAAGCCATAAAAGATGCAGGTTTTCCAGTTGATGACCTGCCAGAACAAGAAATAGCAGTGTGCCGTCTCAGAATTAAAGGCATGGCATGTACCAGCTGTTCTGAATCGGTTGAACATGCTCTTTCATTGGTTGATGGAGTTAAAAAGGCTGTGGTGGGTCTAGCTCTTGAGGAAGCAAAGGTCCACTTTGATCCAAGCATCACTGACTTCAATCACATTGTTGAAGCAGTAGAGGATGCTGGCTTTGGAGCTGATGTCATAAATTCTGGGAATGATGTGAACAAAGTGCACTTGAAACTTGAGGGGATCAGCTCTGAGGAAGACATAAACATAATTCAATCCTATCTTGAATCAGTAGAAGGAGTGAATGATGTAGAAATGGACTTGGCAGAAAATAAGGTAACTGTCAGCTATGACCCTGACCTTACTGGTCCAAGGTCCCTCATATGTTGCATTGAAAAAGCTGGACAGGGCTCCAATTTTTACCATGCAACCTTGTACAGCCCTCCAAGACAAAGAGAAACAGAACGTCAACAGGAAATTTGGATGTACAGAAACCAGTTTATCTGGAGCTGTCTATTTTCAATTCCAGTATTTATTTTTGCCATGGTACTTCCAATGCTTCATCCTTATGGGAACTGGCTGGACTTCAAAGTTCAAAACATGCTTACAGTTGGGATGCTCTTAAGATGGATCCTTTGCACTCCGGTGCAATTCATCATTGGTAGAAGATTTTATGTGGGTTCATATCATGCATTGAGACGAAGATCTGCTAATATGGAAGTTCTTGTTGCACTGGGCACCAATGCTGCTTATTTTTACTCTGTTTATATAGTAATAAAAGCATTGACTACAGATATGTTTGAAGGAAACGATTTCTTTGAGACTAGTGCAATGTTGATATCCTTTATTCTGCTAGGAAAATATTTGGAGGTTGTAGCTAAGGGGAAAACATCAGATGCCTTAGCAAAGCTGACAGACCTTGCTCCTGATACGGCTCATCTGATAGCATTGGATGATGAAGATAATGTAATATCAGATATCGAAATTAGCACTCAATTGATACAAAGGAATGACATACTCAAGATTGTTCCAGGGGAAAAAGTTCCTGTTGATGGCATTGTTGTAAACGGTCAAAGCCATGTGAATGAGAGCATGATCACTGGAGAAGCAAGGCCAATTGCTAAGAAACCTGGCGATAAGGTTATTGGTGGGACTGTCAATGAGAATGGATGCATACTGGTTAAGGCTACTCATGTTGGATCAGAGACTGCGCTCTCCCAAATTGTTCAACTAGTGGAAGCGGCTCAGCTTGCCAGAGCACCTGTTCAGAAATTAGCTGACCAGATTTCAAGGTTTTTTGTACCTACTGTTGTTGTAGTAGCATTTATAACATGGGTGGCTTGGTTCACCCTAGGAGAACTTGGCAGCTACCCGAAACATTGGATGCCAAAAGGCATGGATGGATTTGAGCTTGCACTGCAGTTTGCAATTTCAGTGCTGGTGGTGGCTTGTCCATGTGCTCTGGGACTAGCAACCCCTACAGCGGTTATGGTGGCCACAGGGAAGGGTGCTTCGCTAGGTGTGCTCATCAAGGGTGGAAATGCACTTGAGAAGGCGCACAAGGTGAAAACAATTGTCTTTGATAAGACAGGGACGCTGACAGTAGGAAAACCAGTGGTTGTTAGTGCAGTGCTCTTTTCCAGTTTTTCGATGGAGGAATTCTGTGACATGACTACTGCTGCAGAGGCAAATAGTGAGCATCCATTAGCAAAAGCTGTAGTGGAGTATGCTAAGAGACTGCGCCAGAAGTTTGGCCCTCAAACGGAACAAATGACAGATATTAAGGAGTTTGAGGTGCACCCAGGAGCTGGGGTTAGCGGAAAAGTTGGTGACAAATTAGTCTTGGTTGGGAACAAGAGGCTTATGCAAGATTCTAGTGTGCCAGTTAGTCCTGAGGTTGAGAACCACATTGCAGAAACTGAGAATCTGGCTCGCACGTGTGTGCTAGTGGCAATTAATGGAAAGGTTGCTGGAGCTTTTGCTGTGACTGATCCAGTGAAGCCGGAGGCTGGGCGTGTAATATCTTTTCTCCACTCGATGGACATCTCAACTGTCATGATGACTGGTGATAACTGGGCTACAGCAACCGCTATAGCAAAGGAGGTTGGAATTAAGGAGGTGTATGCTGAGACAGACCCACTGGGGAAAGCCGAAAGGATTAAAAATTTACAGATGAAAGGGATGACCGTGGCAATGGTGGGTGATGGAATAAACGATTCCCCAGCTTTGGTTGCAGCTGATGTTGGCATGGCAATTGGTGCAGGGACTGATGTAGCTATAGAAGCAGCTGACATAGTTCTTATCAAGAGCAACTTGGAAGACGTAATCACAGCGTTAGACCTCTCCAGAAAGACAATGTCAAGGATCCGGCTGAACTATGTTTGGGCCCTTGGCTACAATGTGCTCGCCATGCCAGTAGCCGCTGGAATCCTGTTCCCCTTAGATGGAATCCGCATACCACCTTGGCTTGCTGGTGCTTGCATGGCTGCTTCATCCGTGAGCGTGGTTTGCTCTTCTCTCCTGTTGCAGTCTTACAAGAAACCTTTGCATGTTGAAGATGCTCGAGATGTAAGTCACAACTCGAATTCCAAATGA 2931 0.4422 MEINGKDELKLPLLQPLDGVVVTASQPSTIIDKKIKTVMFKIGNIACASCATSIESVLLELNGVESVMVSVLQGQAAVKYIPELITANAIKEAIKDAGFPVDDLPEQEIAVCRLRIKGMACTSCSESVEHALSLVDGVKKAVVGLALEEAKVHFDPSITDFNHIVEAVEDAGFGADVINSGNDVNKVHLKLEGISSEEDINIIQSYLESVEGVNDVEMDLAENKVTVSYDPDLTGPRSLICCIEKAGQGSNFYHATLYSPPRQRETERQQEIWMYRNQFIWSCLFSIPVFIFAMVLPMLHPYGNWLDFKVQNMLTVGMLLRWILCTPVQFIIGRRFYVGSYHALRRRSANMEVLVALGTNAAYFYSVYIVIKALTTDMFEGNDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLIALDDEDNVISDIEISTQLIQRNDILKIVPGEKVPVDGIVVNGQSHVNESMITGEARPIAKKPGDKVIGGTVNENGCILVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPTVVVVAFITWVAWFTLGELGSYPKHWMPKGMDGFELALQFAISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTIVFDKTGTLTVGKPVVVSAVLFSSFSMEEFCDMTTAAEANSEHPLAKAVVEYAKRLRQKFGPQTEQMTDIKEFEVHPGAGVSGKVGDKLVLVGNKRLMQDSSVPVSPEVENHIAETENLARTCVLVAINGKVAGAFAVTDPVKPEAGRVISFLHSMDISTVMMTGDNWATATAIAKEVGIKEVYAETDPLGKAERIKNLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSNLEDVITALDLSRKTMSRIRLNYVWALGYNVLAMPVAAGILFPLDGIRIPPWLAGACMAASSVSVVCSSLLLQSYKKPLHVEDARDVSHNSNSK* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0201 976 Pfam haloacid dehalogenase-like hydrolase 634 859 - -
Vvi6g0201 976 Pfam E1-E2 ATPase 420 616 - -
Vvi6g0201 976 ProSiteProfiles Heavy-metal-associated domain profile. 185 251 IPR006121 GO:0046872
Vvi6g0201 976 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 32 966 - -
Vvi6g0201 976 ProSiteProfiles Heavy-metal-associated domain profile. 110 176 IPR006121 GO:0046872
Vvi6g0201 976 Gene3D - 111 181 - -
Vvi6g0201 976 Gene3D - 605 902 IPR023214 -
Vvi6g0201 976 CDD HMA 114 175 IPR006121 GO:0046872
Vvi6g0201 976 Gene3D - 184 258 - -
Vvi6g0201 976 FunFam Copper-transporting ATPase 1, putative 406 528 - -
Vvi6g0201 976 CDD P-type_ATPase_Cu-like 279 941 - -
Vvi6g0201 976 CDD HMA 39 101 IPR006121 GO:0046872
Vvi6g0201 976 SUPERFAMILY HMA, heavy metal-associated domain 32 102 IPR036163 GO:0046872
Vvi6g0201 976 SUPERFAMILY Calcium ATPase, transmembrane domain M 375 914 IPR023298 -
Vvi6g0201 976 FunFam Probable copper-transporting ATPase HMA5 754 902 - -
Vvi6g0201 976 SUPERFAMILY HMA, heavy metal-associated domain 181 251 IPR036163 GO:0046872
Vvi6g0201 976 Gene3D - 29 109 - -
Vvi6g0201 976 ProSitePatterns Heavy-metal-associated domain. 116 145 IPR017969 GO:0046872
Vvi6g0201 976 ProSiteProfiles Heavy-metal-associated domain profile. 36 102 IPR006121 GO:0046872
Vvi6g0201 976 SUPERFAMILY Calcium ATPase, transduction domain A 439 524 IPR008250 -
Vvi6g0201 976 Gene3D - 406 528 - -
Vvi6g0201 976 Gene3D - 724 776 IPR023299 GO:0000166
Vvi6g0201 976 Gene3D - 645 723 IPR023299 GO:0000166
Vvi6g0201 976 CDD HMA 189 256 IPR006121 GO:0046872
Vvi6g0201 976 PRINTS H+-transporting ATPase (proton pump) signature 845 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi6g0201 976 PRINTS H+-transporting ATPase (proton pump) signature 876 901 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi6g0201 976 SFLD p-type atpase 620 897 IPR044492 -
Vvi6g0201 976 SUPERFAMILY HAD-like 636 951 IPR036412 -
Vvi6g0201 976 ProSitePatterns Heavy-metal-associated domain. 42 71 IPR017969 GO:0046872
Vvi6g0201 976 SFLD Haloacid Dehalogenase 620 897 - -
Vvi6g0201 976 ProSitePatterns E1-E2 ATPases phosphorylation site. 640 646 IPR018303 -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 638 652 - -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 868 880 - -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 770 781 - -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 792 802 - -
Vvi6g0201 976 PRINTS P-type cation-transporting ATPase superfamily signature 845 864 - -
Vvi6g0201 976 FunFam Copper-transporting ATPase HMA5 109 180 - -
Vvi6g0201 976 Pfam Heavy-metal-associated domain 203 247 IPR006121 GO:0046872
Vvi6g0201 976 Pfam Heavy-metal-associated domain 114 173 IPR006121 GO:0046872
Vvi6g0201 976 Pfam Heavy-metal-associated domain 40 99 IPR006121 GO:0046872
Vvi6g0201 976 NCBIfam copper ion binding protein 40 101 IPR006122 GO:0005507
Vvi6g0201 976 NCBIfam copper ion binding protein 114 174 IPR006122 GO:0005507
Vvi6g0201 976 NCBIfam heavy metal translocating P-type ATPase 351 954 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi6g0201 976 SUPERFAMILY HMA, heavy metal-associated domain 107 181 IPR036163 GO:0046872
Vvi6g0201 976 FunFam ATPase copper transporting beta 33 103 - -
Vvi6g0201 976 NCBIfam HAD-IC family P-type ATPase 391 923 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0201 Vvi-Chr6 2343996 2350685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0201 31 960 Primary Pumps ATPases AT1G63440 56.990 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0201 K17686 - vvi:100265637 1882.84