Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0199 ATGACCGATCCCTACTCCAATTACTCCAATGGATGGTTCAACCTCAATCCTCTTTATCACATCTCTTCTTCCCCTTCTTCTTCCGATCAATCTTTGTGTTCTCCTCGGTATGACTTCAACAAATTGTACTACAATAACTTCAACACCAACAACTATCATTACTCACCCCCCTCTCCCCCTCTCAGAGAAGCTCTTCCCCTCCTCAGTTTAGGCCCAACAAGGTATGATGAACAAGAGTCCTCCTGCAATACTGCCATGGAAGTGGACATGAACAAGGGGAAGGAAGAGACCACCTTATCCAGCTCTGCTGATGATGAAACTGTGACAGTAGCTCTACATTTAGGGCTTCCAAGTCCTAGTTCTACGGATCTCATCTCAAGGCTCTCCTCTTCAGAGACAGAAGACAAGGAAGAAGTCACTGTTGCGTCTGGGTATTCTTCCACAGGCAGTACTCTCATCAAGGGTCAGTATTGGATCCCAACGCCTTCTCAGATTCTGATTGGTCCTACTCAGTTTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTGCACCCGGGTGCAGGAACAACATCGATCATCCAAGATCAAGACCACTCAAAGACTTCAGAACCCTTCAGACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGGAAGTGTGGTAAGGCCTTTGCTGTGAGAGGTGACTGGAGAACCCACGAGAAGAACTGTGGGAAACTTTGGTACTGTGCTTGTGGGTCAGATTTCAAGCACAAGAGGTCCCTCAAAGATCATATCAAGGCATTTGGGCATGGCCATGCAGCTTATGGCATCGACTGCTTCGAAGAAGAGGATGAACCGGCATCTGAAATTGAGCAAGACAACGAATCCTCGCATAGTTAA 1005 0.4687 MTDPYSNYSNGWFNLNPLYHISSSPSSSDQSLCSPRYDFNKLYYNNFNTNNYHYSPPSPPLREALPLLSLGPTRYDEQESSCNTAMEVDMNKGKEETTLSSSADDETVTVALHLGLPSPSSTDLISRLSSSETEDKEEVTVASGYSSTGSTLIKGQYWIPTPSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCFCCAPGCRNNIDHPRSRPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEEDEPASEIEQDNESSHS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0199 334 FunFam Zinc finger protein WIP2 225 307 - -
Vvi6g0199 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Vvi6g0199 334 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Vvi6g0199 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 276 IPR013087 -
Vvi6g0199 334 SMART c2h2final6 282 305 IPR013087 -
Vvi6g0199 334 SMART c2h2final6 172 194 IPR013087 -
Vvi6g0199 334 SMART c2h2final6 256 276 IPR013087 -
Vvi6g0199 334 Gene3D Classic Zinc Finger 233 310 - -
Vvi6g0199 334 PANTHER ZINC FINGER PROTEIN WIP2 34 331 IPR043584 GO:0003700|GO:0010468
Vvi6g0199 334 SUPERFAMILY beta-beta-alpha zinc fingers 239 276 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0199 Vvi-Chr6 2296133 2298207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0199 1 334 C2H2 Transcription Factor Family AT3G57670 57.592 3.11e-141 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0199 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0199 - - vvi:100245035 699.123