Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0193 ATGGAGATGAACAACGACGAAATGATATCGAAGATGGAAGATTATGAGGTGATAGAGCAGATTGGGAGAGGAGCTTTTGGAGCTGCCTTTCTTGTTCTTCATAAAACCGAGAAAAAGAAGTATGTGCTGAAGAAGATTCGGTTGGCCAAACAAACAGAGAAGTTCAAGCGCACAGCCCATCAGGAGATGAATCTGATATCAAAGCTAAACAACCCTTACATTGTGGGGTATAAAGAAGCATGGGTGGAGAAGGGATGTTGTGTATGCATTGTGACAAGTTACTGTGAAGGAGGTGACATGGCTGAAATGATAAAGAAGGCAAGAGGAACCCTTCTTCCTGAGGAGAAGCTCTGCAAGTGGATGGCCCAGCTATTGTTAGCTGTGGATTACCTTCATTCCAACCGCGTCCTACACAGGGATCTTAAGTGCTCCAACATATTCCTTACAAAAAACAATGACATCCGGCTAGGTGACTTTGGACTTGCCAAACTGCTAAGCACAGATGATCTAGCTTCCTCGATTGTAGGCACTCCAAACTACATGTGTCCAGAGCTCCTTGCTGATATACCATATGGCTACAAATCAGATATATGGTCCCTAGGCTGCTGTATGTTTGAAATGGCTGCACATCATCCTGCATTCAGAGCTCCTGATATGGCTGGACTCATCAACAAAATCAACCGATCCTCCATGTCTTTGCTCCCAACTGTATATTCCTCTACACTGAAACAACTGATCAAGAGCATGCTAAGAAAAAACCCGGAACACAGGCCAACTGCTGCTGAACTACTGAGGCATCCACATTTACAACCATACGTTGCTCAGTGCCAGAACATACCTCCTGTCTTTCTTCCAATAAAGTCTGAATACAACTCCAATGACAAAACCTCAGGAACGCGATCATCTAACAAGTCTAGCATTGACAAAGACAGCAAAGGTGGAAAGTCAAGACTGAGGAAGGAGTTGGAAAATGTTCAGTTAGTTAAAGGAAATACTGATGTGCATAAACAAAATCCGGCTTATAATCAAATGCCCACTTCTTCTGATTCCCTGGAAGCTAGAGTCCACACCAAAAGGGTTGATCCTACCAGCTGCTATGACCAAATGCCTAAAGCCAACAAGGGTTTGGTAGTTGACCCCAACTTCACTGAACAAACTGAAAATTCCAATGCAGAAACCGCCTCAGTAAGAACATCAAGCACCCATCAGGAAGATGTGGAACCGGATGAGCTCATTTCTGAGTGTGCCCAGAAAGTGAAGAAAGAAGGGCAAGTTACTGATGAAGCAGACACAGAAGAGGAGAGATTGGAAACACTGTATGCAGGGCCAATACCACCATCAGAAGCCATGAAAATTGCCAAACAAGAGCGTGAAATAGTACCGTCATGCTGCTTACACACAATGGAGAACCTCAGTTCATATCCAGCAAATACTTCCATGGGAAACTCATCAATGGAAAGTACAGTGACACTTCCCTCTGAAAATGAACAGGAAGCCAAAACAGACACTCTCATCATCCCTTTCCAAACACCCAAAAAAGGGGCTCGTGAGCTGAACCGGGCGGTCAGTGACATCTCATCAATAATAACTCCAAGTATGCTGAACAGCAACAACAGAAGTATTGATTTGGACCATCTGAACCAGCAGAGAGCAGAAGCTCTTGAGTCACTGCTTGAGCTTTGTGCACGTTTACTCCGACAAGAAAGGCTGGAGGAACTTGCAGGAGTGTTAAAACCATTTGGGGAAGAAGCAGTTTCATCAAGAGAAACTGCAATTTGGTTGACAAAGAGCATAGCAAGTTTAGGAAAACATAATGGGGGAAGCTAG 1827 0.4412 MEMNNDEMISKMEDYEVIEQIGRGAFGAAFLVLHKTEKKKYVLKKIRLAKQTEKFKRTAHQEMNLISKLNNPYIVGYKEAWVEKGCCVCIVTSYCEGGDMAEMIKKARGTLLPEEKLCKWMAQLLLAVDYLHSNRVLHRDLKCSNIFLTKNNDIRLGDFGLAKLLSTDDLASSIVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEMAAHHPAFRAPDMAGLINKINRSSMSLLPTVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPYVAQCQNIPPVFLPIKSEYNSNDKTSGTRSSNKSSIDKDSKGGKSRLRKELENVQLVKGNTDVHKQNPAYNQMPTSSDSLEARVHTKRVDPTSCYDQMPKANKGLVVDPNFTEQTENSNAETASVRTSSTHQEDVEPDELISECAQKVKKEGQVTDEADTEEERLETLYAGPIPPSEAMKIAKQEREIVPSCCLHTMENLSSYPANTSMGNSSMESTVTLPSENEQEAKTDTLIIPFQTPKKGARELNRAVSDISSIITPSMLNSNNRSIDLDHLNQQRAEALESLLELCARLLRQERLEELAGVLKPFGEEAVSSRETAIWLTKSIASLGKHNGGS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0193 608 MobiDBLite consensus disorder prediction 305 322 - -
Vvi6g0193 608 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Vvi6g0193 608 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0193 608 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi6g0193 608 MobiDBLite consensus disorder prediction 290 304 - -
Vvi6g0193 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vvi6g0193 608 CDD STKc_Nek 14 269 - -
Vvi6g0193 608 MobiDBLite consensus disorder prediction 290 322 - -
Vvi6g0193 608 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Vvi6g0193 608 SUPERFAMILY Protein kinase-like (PK-like) 12 306 IPR011009 -
Vvi6g0193 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 559 - -
Vvi6g0193 608 MobiDBLite consensus disorder prediction 385 408 - -
Vvi6g0193 608 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0193 608 Gene3D Transferase(Phosphotransferase) domain 1 97 348 - -
Vvi6g0193 608 MobiDBLite consensus disorder prediction 385 401 - -
Vvi6g0193 608 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0193 608 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0193 Vvi-Chr6 2261767 2265482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0193 12 283 MAP Kinase Kinase Gene Family AT4G26070 31.560 5.16e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vvi6g0193 Pkinase 8.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0193 K08857 - vvi:100246807 1176.39