Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0192 ATGGATCATGATGAGACTGGATGCCAAGCTCATCCAGAGGGTCCCATTTTGTGCATAAACAATTGTGGGTTCTTTGGAAGCCCGGCAACTATGAACATGTGTTCCAAGTGCCACAAAGATATGATGTTGAAACAAGAGCAGGCTAAACTTGCTGCATCATCCATAGACAGCATTGTTAATGGATCGTCAAGCAACAATGGAAAGGAACCTGCTATTGCATCCACTGTGGATGTGCAAGTTGATGCAAAGGAGCCAAAGATCATTTCTGTGCAGTCATCCTTTTCTTTTGGCTCTGAGGGGAGTGGCGAGGCCAAGCCAAAGGAGGGTCCAAACCGGTGCAGCACCTGCAAGAAACGAGTTGGTTTGACAGGATTCAATTGTCGATGCGGTCACCTTTTCTGTGCAACACACCGCTACTCAGACAAACATGACTGCCCTTTTGATTATCGCACTGCTGCACGGGATGCGATAGCTAAAGCCAACCCTGTTGTCAAGGCAGAAAAGCTGGATAAAATCTAA 519 0.4682 MDHDETGCQAHPEGPILCINNCGFFGSPATMNMCSKCHKDMMLKQEQAKLAASSIDSIVNGSSSNNGKEPAIASTVDVQVDAKEPKIISVQSSFSFGSEGSGEAKPKEGPNRCSTCKKRVGLTGFNCRCGHLFCATHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0192 172 SUPERFAMILY AN1-like Zinc finger 102 167 IPR035896 -
Vvi6g0192 172 Gene3D - 90 168 IPR035896 -
Vvi6g0192 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Vvi6g0192 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Vvi6g0192 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Vvi6g0192 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Vvi6g0192 172 Gene3D - 4 67 - -
Vvi6g0192 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Vvi6g0192 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Vvi6g0192 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Vvi6g0192 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Vvi6g0192 172 FunFam Zinc finger AN1-type containing 6 88 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0192 Vvi-Chr6 2249653 2250171 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0192 4 172 C2H2 Transcription Factor Family AT3G52800 44.706 1.14e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0192 - - vvi:100267237 340.117