Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0190 ATGTGGTGGGAATGTAGGCATAGATGGACAGGAAGGTATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCGATCAGTAACTATGAGAGGGAACTGGAGGAGATGAAGCACATGACCAGACAAGAATTTGTGGCCTCCATTAGAAGGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAGGCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTAGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAAGAGCATTCTTGAAAGCAACACTCTTCCGATAGGTGGGGGAGCGGCCAAGCGGCTAAAGGAGGCTCAAGCAATTGAATCATCGAGAAAACGGGAAGAAATGATAGCCCTAGGTTCAAGCTTCCAATATGGGAGCTCGAGCTCCAGCAGGTTACAGACATATCCTCTAATGCAGCAGCAGTTTGAGCAACCTCAGCCTTTACTAACATTACAGAACCAAGAACCATTACTAACTTTGCAAAACCCTGAAATTTCTCAGTACCCCCAAGACTCCCAGTTTCACCAAAACTACATCCAAACTCAGTTGCAGTTGCACCAGCAATCTGGGTCGTACCTGAACCATTCAAGCCAAAGTCCTCAGTTCTACAACAGTTACCTCCACAACAACCCGGCTCTTCTTCATGGGCTGATGAGTATGGGCTCTTCTTCATCTGTCATGGAGAATAATGGGAGTTCTAGTGGGAGTTACAATGGAGGATACTTCAATAATGGACTTGGGGTTGCTTCGAATTCTACGGTGGCTAGTGCAGTAGGATCAGCAGAGGAGCTTCCCCTCATCAAGGTTGATTACGATATGCCGGCCGCAGGCTATGGCAGCTGGTCAGGTGACTCAGTTCAGGGACAGAATGCTGGAGTTTTTACAATGTGGAATGACTGA 1149 0.4639 MWWECRHRWTGRYEAHLWDNSCRREGQSRKGRQAGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYERELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMIALGSSFQYGSSSSSRLQTYPLMQQQFEQPQPLLTLQNQEPLLTLQNPEISQYPQDSQFHQNYIQTQLQLHQQSGSYLNHSSQSPQFYNSYLHNNPALLHGLMSMGSSSSVMENNGSSSGSYNGGYFNNGLGVASNSTVASAVGSAEELPLIKVDYDMPAAGYGSWSGDSVQGQNAGVFTMWND* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0190 382 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 ProSiteProfiles AP2/ERF domain profile. 1 64 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 260 - -
Vvi6g0190 382 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 SUPERFAMILY DNA-binding domain 5 66 IPR016177 GO:0003677
Vvi6g0190 382 FunFam AP2-like ethylene-responsive transcription factor 99 160 - -
Vvi6g0190 382 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 Pfam AP2 domain 6 56 IPR001471 GO:0003700|GO:0006355
Vvi6g0190 382 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vvi6g0190 382 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Vvi6g0190 382 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0190 Vvi-Chr6 2228790 2230617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0190 5 382 AP2-EREBP Transcription Factor Family AT3G20840 71.465 2.13e-180 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi6g0190 AP2 3.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0190 K09285 - vvi:100256966 704.901