Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0189 ATGTGTCGAGATTTGAAAGTACCACAAATCTCAACCCTCAAATCTCGAATGGCACAGAAGAGAGAAAACGAACAGGCCACCGAAACCGAGCTCAAAGTCCCCGAAACTCTAACCCTATGCGTCCAAACCTGCGGCTTCTCTGCATCCGATAAGCCCAGATCCAGATCTCCCTCGCCGCCGGACGACCCCGATTCGACCCTCGAGAATTCAGATCAAGGCGCTGTGAGAAGGAGGGAGGTGAACCGGTGCTCCGGCTGCAAGAGGAAGCTAGGACTGATCGGCTTTCGGTGCCGGTGCGGCGAGATGTTCTGCTCGAAGCATCGGTACTCCGATCGGCATGAGTGCAGGTTCGATTACAAGGCGGCGGGACGGGAGATGATCGCGAAGGAGAATCCGGTGGTGAGGCCGGCGAAGATTCTCAAAGTTTGA 429 0.5571 MCRDLKVPQISTLKSRMAQKRENEQATETELKVPETLTLCVQTCGFSASDKPRSRSPSPPDDPDSTLENSDQGAVRRREVNRCSGCKRKLGLIGFRCRCGEMFCSKHRYSDRHECRFDYKAAGREMIAKENPVVRPAKILKV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0189 142 Pfam AN1-like Zinc finger 83 120 IPR000058 GO:0008270
Vvi6g0189 142 Gene3D - 54 138 IPR035896 -
Vvi6g0189 142 PANTHER AN1-TYPE ZINC FINGER PROTEIN 30 141 - -
Vvi6g0189 142 SMART AN1_Zf_4 83 120 IPR000058 GO:0008270
Vvi6g0189 142 SUPERFAMILY AN1-like Zinc finger 69 135 IPR035896 -
Vvi6g0189 142 FunFam Zinc finger AN1-type containing 6 58 138 - -
Vvi6g0189 142 MobiDBLite consensus disorder prediction 47 70 - -
Vvi6g0189 142 ProSiteProfiles Zinc finger AN1-type profile. 77 123 IPR000058 GO:0008270
Vvi6g0189 142 Coils Coil 10 30 - -
Vvi6g0189 142 MobiDBLite consensus disorder prediction 47 74 - -
Vvi6g0189 142 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0189 Vvi-Chr6 2218700 2219421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0189 81 142 C2H2 Transcription Factor Family AT3G52800 56.452 2.68e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0189 - - vvi:100251836 249.98