Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0188 ATGGAGAATGCCTCGCCGGAGCTACATCTGGACGACCTTCCGGCCATCCAAGTGCTCGGAAAAGGCGCCATGGGCACCGTTTTCCTCGTCCATGACCGCCTAGCTGACCCTTCTGCTCTCAGTCCTTTCGCTCTCAAAGTTGTCGATAAATTTTCTCACCACACCAAACTCGACGCCGACCGTCGTGCCCGCTGGGAGATCTCCGTTCTGAAACGTTTATCGAATCCAGAACACCCGTTTCTTCCCACCCTAATCGGATCTTTGGAGACTCCCGAATTCCTTGCCTGGGCCGTTCCGTTTTGCCCCGGTGGGGACCTCAATGTTCTCCGGTATCATCAGACAGACCGCGTCTTCTCGCCGTCGGTGATACGGTTCTACGTGGCCGAGATCATCTGCGCGCTCGAGCACTTACATAGCATGGGCATTGCGTACCGTGATCTCAAGCCAGAGAACGTGTTGATACAGCAGTCAGGTCACGTGACGCTCACGGACTTCGATCTTTCCCGAAGCCTGAAGCCGAGAACGGTGAAGACACTCATCACCTCCGACCCAATTGAGCTCGACCCTCCGGAGATCCGTCAGAGGCATCGCCGGAACCTGACGCGACTCGTCACCATTGTGTCCGACAAGGGCGGGCTGAAGAAAGCTAAGTCCGCGCGTGTCTCGCCTGTGAGCCGCCGGAAACAGAGCTTCTCGAACGGGGAACGGTCGAACTCGTTCGTGGGGACGGAAGAGTATGTGTCGCCGGAGGTGGTCCGCGGCGACGGACACGAGTTCGCCGTTGATTGGTGGGCTTTGGGGATTCTCACGTACGAGATGCTCTACGGAACGACGCCGTTTAAAGGGAAAAATCGAAAAGAAACATTTCGAAATGTTTTAATGAAAACCCCAGAGTTCATCGGAAAACGGACGGCCCTCACTGACTTGATCGGACGGCTGTTAGAGAAGGACCCCACAAAACGATTGGGATACAACAGAGGCGCGTCGGAGATCAAACAGCACGTGTTCTTCCGAGGATTACAGTGGGACAAGCTAACAGAGGTATTAAGGCCGCCGTTTCTGCCGTCAATGGACGATGAACTTTTAACGGAGAATATAACGGCAGATGAGTTCGATATAAGAGAATACTTTCAGAAAACAAAGGTAAAACCCTCACTTACGCCGTCAACGTCATCCAGAAGCATGTTTTCCACGATATTTTCCAATTTAGTTCGAAAGTGGTTAAAGAAGTAA 1233 0.5304 MENASPELHLDDLPAIQVLGKGAMGTVFLVHDRLADPSALSPFALKVVDKFSHHTKLDADRRARWEISVLKRLSNPEHPFLPTLIGSLETPEFLAWAVPFCPGGDLNVLRYHQTDRVFSPSVIRFYVAEIICALEHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRSLKPRTVKTLITSDPIELDPPEIRQRHRRNLTRLVTIVSDKGGLKKAKSARVSPVSRRKQSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLMKTPEFIGKRTALTDLIGRLLEKDPTKRLGYNRGASEIKQHVFFRGLQWDKLTEVLRPPFLPSMDDELLTENITADEFDIREYFQKTKVKPSLTPSTSSRSMFSTIFSNLVRKWLKK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0188 410 Pfam Protein kinase domain 231 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0188 410 Pfam Protein kinase domain 16 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0188 410 SMART serkin_6 13 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0188 410 ProSiteProfiles Protein kinase domain profile. 13 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0188 410 ProSitePatterns Protein kinases ATP-binding region signature. 19 46 IPR017441 GO:0005524
Vvi6g0188 410 FunFam Serine/threonine-protein kinase UCNL 13 104 - -
Vvi6g0188 410 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Vvi6g0188 410 Gene3D Phosphorylase Kinase; domain 1 357 368 - -
Vvi6g0188 410 Gene3D Phosphorylase Kinase; domain 1 10 104 - -
Vvi6g0188 410 PANTHER FLIPPASE KINASE 1-RELATED 7 359 - -
Vvi6g0188 410 FunFam Serine/threonine-protein kinase OXI1 235 356 - -
Vvi6g0188 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vvi6g0188 410 SUPERFAMILY Protein kinase-like (PK-like) 11 397 IPR011009 -
Vvi6g0188 410 Gene3D Transferase(Phosphotransferase) domain 1 105 178 - -
Vvi6g0188 410 Gene3D Transferase(Phosphotransferase) domain 1 231 356 - -
Vvi6g0188 410 ProSiteProfiles AGC-kinase C-terminal domain profile. 338 410 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0188 Vvi-Chr6 2201086 2202617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0188 8 394 AGC Kinase Gene Family AT3G20830 62.404 3.16e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi6g0188 Pkinase 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0188 - K08286 vvi:100241690 795.808